miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 113511 0.76 0.25639
Target:  5'- gAGAGCCGCggagggagCUCCGCCGgcucggcguCGCCGGCc -3'
miRNA:   3'- gUUUCGGCGa-------GAGGCGGC---------GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 149989 0.76 0.262283
Target:  5'- --cGGCCGCUaUCUGCCGCGCugcuaCGACGg -3'
miRNA:   3'- guuUCGGCGAgAGGCGGCGCG-----GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 44284 0.76 0.268286
Target:  5'- aGGAGuCCGCgC-CCGCCGgGCCGGCGa -3'
miRNA:   3'- gUUUC-GGCGaGaGGCGGCgCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 82931 0.76 0.286962
Target:  5'- cCGucGCCGCUCcgacuccaggcCCGCCGCGCaCGGCGc -3'
miRNA:   3'- -GUuuCGGCGAGa----------GGCGGCGCG-GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 105392 0.75 0.299971
Target:  5'- -cGAGCUGUUCggCCGCCGCGCgGAUc -3'
miRNA:   3'- guUUCGGCGAGa-GGCGGCGCGgCUGc -5'
10973 5' -60.3 NC_002794.1 + 67028 0.75 0.313432
Target:  5'- --cGGCCgGCUC-CCGCCGCGUCG-CGg -3'
miRNA:   3'- guuUCGG-CGAGaGGCGGCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 70562 0.75 0.313432
Target:  5'- -cGAGCCGCUCcagaucgcUCUGCCGaguCGCCGACu -3'
miRNA:   3'- guUUCGGCGAG--------AGGCGGC---GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 53234 0.75 0.320333
Target:  5'- --cGGuCCGUccUCggcCCGCCGCGCCGGCGu -3'
miRNA:   3'- guuUC-GGCG--AGa--GGCGGCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 6927 0.75 0.320333
Target:  5'- aGAAGCCGCag-CCGCCGCG-CGGCa -3'
miRNA:   3'- gUUUCGGCGagaGGCGGCGCgGCUGc -5'
10973 5' -60.3 NC_002794.1 + 114346 0.75 0.320333
Target:  5'- --cAGCgGCUCgUCCGCCGCcaggGCCGGCu -3'
miRNA:   3'- guuUCGgCGAG-AGGCGGCG----CGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 192638 0.75 0.320333
Target:  5'- --cGGCCGCUC-CaGCCGCGCCGcCGc -3'
miRNA:   3'- guuUCGGCGAGaGgCGGCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 30933 0.75 0.327346
Target:  5'- -cAGGCUGCgC-CCGCCGCGCCG-CGa -3'
miRNA:   3'- guUUCGGCGaGaGGCGGCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 70316 0.74 0.334473
Target:  5'- aAGAGCCGCUUcgcCCGCgaaGaCGCCGACGg -3'
miRNA:   3'- gUUUCGGCGAGa--GGCGg--C-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 69803 0.74 0.334473
Target:  5'- ---cGCCGCguagCccgCCGCCGCGaCCGGCGu -3'
miRNA:   3'- guuuCGGCGa---Ga--GGCGGCGC-GGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 107183 0.74 0.341712
Target:  5'- gCGGAGCCgGCg--CCGCCGcCGCCGGCc -3'
miRNA:   3'- -GUUUCGG-CGagaGGCGGC-GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 180936 0.74 0.341712
Target:  5'- gGAGGUCGgUCUCgCGuCCGCGgCCGACGc -3'
miRNA:   3'- gUUUCGGCgAGAG-GC-GGCGC-GGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 110622 0.74 0.341712
Target:  5'- gGGAGCCGCgg--CGCCGCGgCGGCGg -3'
miRNA:   3'- gUUUCGGCGagagGCGGCGCgGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 131291 0.74 0.341712
Target:  5'- ---cGCCGUcgCUCCGCCGC-CCGugGu -3'
miRNA:   3'- guuuCGGCGa-GAGGCGGCGcGGCugC- -5'
10973 5' -60.3 NC_002794.1 + 180685 0.74 0.341712
Target:  5'- --cGGCCGCUC-CCGgCGC-CCGGCGg -3'
miRNA:   3'- guuUCGGCGAGaGGCgGCGcGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 107265 0.74 0.341712
Target:  5'- gCGGAGCCGCgccgUCCGCCGCcgucgccccgucGUCGACGc -3'
miRNA:   3'- -GUUUCGGCGag--AGGCGGCG------------CGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.