miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 103832 0.66 0.804664
Target:  5'- uGGAGUCGCaggCCuugaccaccgagcggGCCGcCGCCGACGa -3'
miRNA:   3'- gUUUCGGCGagaGG---------------CGGC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 190287 0.66 0.801271
Target:  5'- aGAAGuCCGUg--UCGaaGCGCCGGCGg -3'
miRNA:   3'- gUUUC-GGCGagaGGCggCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 21453 0.66 0.801271
Target:  5'- ---cGUCGCUCggcgUCGCCGUGaCGGCa -3'
miRNA:   3'- guuuCGGCGAGa---GGCGGCGCgGCUGc -5'
10973 5' -60.3 NC_002794.1 + 124964 0.66 0.801271
Target:  5'- uGGAGCUGCUCaagUgGaUCGCGCCGcACGu -3'
miRNA:   3'- gUUUCGGCGAGa--GgC-GGCGCGGC-UGC- -5'
10973 5' -60.3 NC_002794.1 + 116695 0.66 0.801271
Target:  5'- gGGAGCCgGC-CUCCagcaCCGCGUCGAgCGu -3'
miRNA:   3'- gUUUCGG-CGaGAGGc---GGCGCGGCU-GC- -5'
10973 5' -60.3 NC_002794.1 + 148531 0.66 0.801271
Target:  5'- ---cGCCGCUUcccgugccucgUCgGCUGCGCgCGGCu -3'
miRNA:   3'- guuuCGGCGAG-----------AGgCGGCGCG-GCUGc -5'
10973 5' -60.3 NC_002794.1 + 78372 0.66 0.801271
Target:  5'- aCAcGGCCug-CUCCGCCaGCGaCGGCGa -3'
miRNA:   3'- -GUuUCGGcgaGAGGCGG-CGCgGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 53957 0.66 0.801271
Target:  5'- aCAGAGCCucgcGCguccgCUCCGuccggcugccCCGCGCCaGCGu -3'
miRNA:   3'- -GUUUCGG----CGa----GAGGC----------GGCGCGGcUGC- -5'
10973 5' -60.3 NC_002794.1 + 188551 0.66 0.801271
Target:  5'- --cGGCgGCggguacugCUgCCGCaCGUGCCGACa -3'
miRNA:   3'- guuUCGgCGa-------GA-GGCG-GCGCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 187266 0.66 0.801271
Target:  5'- ---uGCCGCUCgCgCGucucgaacaCCGCGCCgGACGg -3'
miRNA:   3'- guuuCGGCGAGaG-GC---------GGCGCGG-CUGC- -5'
10973 5' -60.3 NC_002794.1 + 44535 0.66 0.801271
Target:  5'- -cGAGCgCGC-CgUCGUCGuCGCCGGCGg -3'
miRNA:   3'- guUUCG-GCGaGaGGCGGC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 93988 0.66 0.801271
Target:  5'- -----gCGCUCggcgcggaCGCCgGCGCCGGCGg -3'
miRNA:   3'- guuucgGCGAGag------GCGG-CGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 34726 0.66 0.792691
Target:  5'- aCGAGGCgCGggCggCCGCagaGCGCgCGACGg -3'
miRNA:   3'- -GUUUCG-GCgaGa-GGCGg--CGCG-GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 107056 0.66 0.792691
Target:  5'- gGAGGCgGCgggcgCggcgCCGCCGgcaugucggaGCCGACGg -3'
miRNA:   3'- gUUUCGgCGa----Ga---GGCGGCg---------CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 102251 0.66 0.792691
Target:  5'- -cGAGaaGCUCUUCGUCGCcCUGAUGa -3'
miRNA:   3'- guUUCggCGAGAGGCGGCGcGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 42221 0.66 0.792691
Target:  5'- ---uGCCGCUggaUCaGCCGCGagaCGGCGg -3'
miRNA:   3'- guuuCGGCGAg--AGgCGGCGCg--GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 138419 0.66 0.792691
Target:  5'- --cGGCCGCcgaCUCgucgaGCCGCGgUGGCGg -3'
miRNA:   3'- guuUCGGCGa--GAGg----CGGCGCgGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 185464 0.66 0.792691
Target:  5'- aCAAAcGCCGCgggCggCgGCCGCGgCGAgGg -3'
miRNA:   3'- -GUUU-CGGCGa--Ga-GgCGGCGCgGCUgC- -5'
10973 5' -60.3 NC_002794.1 + 144888 0.66 0.792691
Target:  5'- gCGGGGCgagaCGCUCgcgCCGCUGggccccgcCGCCGGCa -3'
miRNA:   3'- -GUUUCG----GCGAGa--GGCGGC--------GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 75588 0.66 0.792691
Target:  5'- --uGGCUGCcggCCGCCGCGCaaaaCGGCu -3'
miRNA:   3'- guuUCGGCGagaGGCGGCGCG----GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.