miRNA display CGI


Results 41 - 60 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 185464 0.66 0.792691
Target:  5'- aCAAAcGCCGCgggCggCgGCCGCGgCGAgGg -3'
miRNA:   3'- -GUUU-CGGCGa--Ga-GgCGGCGCgGCUgC- -5'
10973 5' -60.3 NC_002794.1 + 144888 0.66 0.792691
Target:  5'- gCGGGGCgagaCGCUCgcgCCGCUGggccccgcCGCCGGCa -3'
miRNA:   3'- -GUUUCG----GCGAGa--GGCGGC--------GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 195570 0.66 0.792691
Target:  5'- -cGAGCCGCccCgaccgaCCGCCGgaccgGCCGACGc -3'
miRNA:   3'- guUUCGGCGa-Ga-----GGCGGCg----CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 44179 0.66 0.791826
Target:  5'- --cGGCgGCUCgucgacUCCgggcgaaGCCGgGCCGACGu -3'
miRNA:   3'- guuUCGgCGAG------AGG-------CGGCgCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 34345 0.66 0.791826
Target:  5'- --cGGCCGCgccgUUCCGCC-CGCUcuaccugGACGa -3'
miRNA:   3'- guuUCGGCGa---GAGGCGGcGCGG-------CUGC- -5'
10973 5' -60.3 NC_002794.1 + 99545 0.66 0.791826
Target:  5'- -cGGGCCGCggaaaCCGCgCGCGCCcuccgcgGGCGa -3'
miRNA:   3'- guUUCGGCGaga--GGCG-GCGCGG-------CUGC- -5'
10973 5' -60.3 NC_002794.1 + 181778 0.66 0.78398
Target:  5'- ---cGCCGCg--CCGCCGCGUCu-CGu -3'
miRNA:   3'- guuuCGGCGagaGGCGGCGCGGcuGC- -5'
10973 5' -60.3 NC_002794.1 + 153461 0.66 0.78398
Target:  5'- -cGAGaUCGuCUUUCCGCCGCGCauccGCGa -3'
miRNA:   3'- guUUC-GGC-GAGAGGCGGCGCGgc--UGC- -5'
10973 5' -60.3 NC_002794.1 + 146564 0.66 0.78398
Target:  5'- -cGGGCCcgaGUUCcgagUCCGCCGCGgacUCGACGa -3'
miRNA:   3'- guUUCGG---CGAG----AGGCGGCGC---GGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 123968 0.66 0.78398
Target:  5'- aGGAGCCGUacgUCgaccacgCCGUgGCGCCGGu- -3'
miRNA:   3'- gUUUCGGCG---AGa------GGCGgCGCGGCUgc -5'
10973 5' -60.3 NC_002794.1 + 119520 0.66 0.78398
Target:  5'- gCGGAGCCGgccgcggacccCUCgUCCgcgGCCGuCGCCGGCc -3'
miRNA:   3'- -GUUUCGGC-----------GAG-AGG---CGGC-GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 8313 0.66 0.78398
Target:  5'- gAAGGCgGCa--CCGCCGCGCCccGCGc -3'
miRNA:   3'- gUUUCGgCGagaGGCGGCGCGGc-UGC- -5'
10973 5' -60.3 NC_002794.1 + 86334 0.66 0.78398
Target:  5'- -cGAGCCGggacggaugCUCCggGCCGCGcCCGACc -3'
miRNA:   3'- guUUCGGCga-------GAGG--CGGCGC-GGCUGc -5'
10973 5' -60.3 NC_002794.1 + 86382 0.66 0.78398
Target:  5'- -cGAGCCGggacggaugCUCCggGCCGCGcCCGACc -3'
miRNA:   3'- guUUCGGCga-------GAGG--CGGCGC-GGCUGc -5'
10973 5' -60.3 NC_002794.1 + 86190 0.66 0.78398
Target:  5'- -cGAGCCGggacggaugCUCCggGCCGCGcCCGACc -3'
miRNA:   3'- guUUCGGCga-------GAGG--CGGCGC-GGCUGc -5'
10973 5' -60.3 NC_002794.1 + 86502 0.66 0.78398
Target:  5'- -cGAGCCGggacggaugCUCCggGCCGCGcCCGACc -3'
miRNA:   3'- guUUCGGCga-------GAGG--CGGCGC-GGCUGc -5'
10973 5' -60.3 NC_002794.1 + 86550 0.66 0.78398
Target:  5'- -cGAGCCGggacggaugCUCCggGCCGCGcCCGACc -3'
miRNA:   3'- guUUCGGCga-------GAGG--CGGCGC-GGCUGc -5'
10973 5' -60.3 NC_002794.1 + 150856 0.66 0.78398
Target:  5'- --cGGCCGCgUCUaCGCCuauaGCCGGCGc -3'
miRNA:   3'- guuUCGGCG-AGAgGCGGcg--CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 189971 0.66 0.78398
Target:  5'- -cGGGCCGC---CCGCuCGC-CCGACGg -3'
miRNA:   3'- guUUCGGCGagaGGCG-GCGcGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 34072 0.66 0.78398
Target:  5'- ---cGCCGUUC-CCGCCGgCgGCCGGg- -3'
miRNA:   3'- guuuCGGCGAGaGGCGGC-G-CGGCUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.