miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 32 0.66 0.817184
Target:  5'- aCGAGGCCGCcgcgggcUCUCgGaCGaacgGCCGACGc -3'
miRNA:   3'- -GUUUCGGCG-------AGAGgCgGCg---CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 6927 0.75 0.320333
Target:  5'- aGAAGCCGCag-CCGCCGCG-CGGCa -3'
miRNA:   3'- gUUUCGGCGagaGGCGGCGCgGCUGc -5'
10973 5' -60.3 NC_002794.1 + 7740 0.68 0.700952
Target:  5'- --uAGuuGUUCUCUGCC-CaGCCGGCGc -3'
miRNA:   3'- guuUCggCGAGAGGCGGcG-CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 8313 0.66 0.78398
Target:  5'- gAAGGCgGCa--CCGCCGCGCCccGCGc -3'
miRNA:   3'- gUUUCGgCGagaGGCGGCGCGGc-UGC- -5'
10973 5' -60.3 NC_002794.1 + 11790 0.68 0.700952
Target:  5'- ---cGCCGCggugUCCGUgGCGCCGcCGc -3'
miRNA:   3'- guuuCGGCGag--AGGCGgCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 11843 0.7 0.565218
Target:  5'- ---cGCCGCgacCUCCGaCCGCcGgCGACGa -3'
miRNA:   3'- guuuCGGCGa--GAGGC-GGCG-CgGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 11951 0.66 0.766194
Target:  5'- -uGAGCgUGCUCUCCGUCuaCGCuCGugGa -3'
miRNA:   3'- guUUCG-GCGAGAGGCGGc-GCG-GCugC- -5'
10973 5' -60.3 NC_002794.1 + 12053 0.69 0.603894
Target:  5'- ---uGCCGguaUCUCUggGCCGCGCCGcCGa -3'
miRNA:   3'- guuuCGGCg--AGAGG--CGGCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 12174 0.68 0.652612
Target:  5'- uCGucGCCGC-CgacgCCGCCGCgGCCGGg- -3'
miRNA:   3'- -GUuuCGGCGaGa---GGCGGCG-CGGCUgc -5'
10973 5' -60.3 NC_002794.1 + 12203 0.72 0.472165
Target:  5'- ---cGCCGCUCggacgugCCgGCgGCGUCGGCGg -3'
miRNA:   3'- guuuCGGCGAGa------GG-CGgCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 12237 0.68 0.700952
Target:  5'- --cGGCgGCgccgUCCGCgGCGCCGAUc -3'
miRNA:   3'- guuUCGgCGag--AGGCGgCGCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 12762 0.78 0.203287
Target:  5'- ---uGCCGCUCUugccgCCGCCGCGCuuCGGCGa -3'
miRNA:   3'- guuuCGGCGAGA-----GGCGGCGCG--GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 13251 0.7 0.574837
Target:  5'- ---uGCUGCUCcUCGCCGgGCUGugGu -3'
miRNA:   3'- guuuCGGCGAGaGGCGGCgCGGCugC- -5'
10973 5' -60.3 NC_002794.1 + 13964 0.67 0.756223
Target:  5'- -cGAGCCGCUCggagacgUUCGCUGCgGCCG-Cu -3'
miRNA:   3'- guUUCGGCGAG-------AGGCGGCG-CGGCuGc -5'
10973 5' -60.3 NC_002794.1 + 14212 0.66 0.809712
Target:  5'- --uGGCCGCcCcaaCGCCaccCGCCGACGa -3'
miRNA:   3'- guuUCGGCGaGag-GCGGc--GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 14761 0.72 0.445743
Target:  5'- cCGAAGCCG-UCgaggCCGCUGagGCCGGCGa -3'
miRNA:   3'- -GUUUCGGCgAGa---GGCGGCg-CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 14959 0.66 0.766194
Target:  5'- ---cGCCGC-CUCgaaGCCGCGUaacgCGACGc -3'
miRNA:   3'- guuuCGGCGaGAGg--CGGCGCG----GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 15275 0.69 0.62337
Target:  5'- -cGAGCCGCgcggCUCCcuCCGCGCgagCGACu -3'
miRNA:   3'- guUUCGGCGa---GAGGc-GGCGCG---GCUGc -5'
10973 5' -60.3 NC_002794.1 + 16488 0.73 0.387489
Target:  5'- ---cGCCGC-CUCCGCCGCcaccGCCGcCGc -3'
miRNA:   3'- guuuCGGCGaGAGGCGGCG----CGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 16706 0.71 0.527217
Target:  5'- -cGAGUCGCUCgCCGUCcgaggagucuGCGCCGGCu -3'
miRNA:   3'- guUUCGGCGAGaGGCGG----------CGCGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.