miRNA display CGI


Results 21 - 40 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 17408 0.69 0.639945
Target:  5'- cCGAAGCCaccgcggccaucgcGgUCUCCGCgC-CGCCGGCGc -3'
miRNA:   3'- -GUUUCGG--------------CgAGAGGCG-GcGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 17470 0.66 0.78398
Target:  5'- gAAGGuUCGCUCcacaCGCCGCguuugcgaucGCCGACGc -3'
miRNA:   3'- gUUUC-GGCGAGag--GCGGCG----------CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 17662 0.68 0.700952
Target:  5'- cCAccGCCGC-CaCCGCCGCcggccCCGGCGg -3'
miRNA:   3'- -GUuuCGGCGaGaGGCGGCGc----GGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 18623 0.67 0.719975
Target:  5'- --cGGCCGCccCUCCGacgcCCGCuccGCCGGCa -3'
miRNA:   3'- guuUCGGCGa-GAGGC----GGCG---CGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 18665 0.67 0.719975
Target:  5'- cCGucGCCGCUucCUCgGCUGCcGCCGcCGu -3'
miRNA:   3'- -GUuuCGGCGA--GAGgCGGCG-CGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 19307 0.68 0.652612
Target:  5'- ---cGUCGCUgaCCgcccacGCCGCGCUGGCGa -3'
miRNA:   3'- guuuCGGCGAgaGG------CGGCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 19509 0.73 0.420168
Target:  5'- gGAGGUCGCg--CCGCUcggaGCGCCGGCGc -3'
miRNA:   3'- gUUUCGGCGagaGGCGG----CGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 20455 0.69 0.613625
Target:  5'- uGGAGCCGC-CUCUGCgGCcCCGAa- -3'
miRNA:   3'- gUUUCGGCGaGAGGCGgCGcGGCUgc -5'
10973 5' -60.3 NC_002794.1 + 21453 0.66 0.801271
Target:  5'- ---cGUCGCUCggcgUCGCCGUGaCGGCa -3'
miRNA:   3'- guuuCGGCGAGa---GGCGGCGCgGCUGc -5'
10973 5' -60.3 NC_002794.1 + 21962 0.79 0.176214
Target:  5'- --cGGCCGCUC-CCGCgGCGCCGuCGu -3'
miRNA:   3'- guuUCGGCGAGaGGCGgCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 22574 0.73 0.420168
Target:  5'- gCAcGGCCGCUgUCCaaGUCGCGCuCGGCa -3'
miRNA:   3'- -GUuUCGGCGAgAGG--CGGCGCG-GCUGc -5'
10973 5' -60.3 NC_002794.1 + 24009 0.69 0.613625
Target:  5'- -cGGGCCGCcgUCaCCGCgGCGCCucGGCGa -3'
miRNA:   3'- guUUCGGCG--AGaGGCGgCGCGG--CUGC- -5'
10973 5' -60.3 NC_002794.1 + 30933 0.75 0.327346
Target:  5'- -cAGGCUGCgC-CCGCCGCGCCG-CGa -3'
miRNA:   3'- guUUCGGCGaGaGGCGGCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 31218 0.66 0.818007
Target:  5'- aCGAAG-CGCUCgaacgugUCGCUGUaGCCGAUGa -3'
miRNA:   3'- -GUUUCgGCGAGa------GGCGGCG-CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 31368 0.67 0.719975
Target:  5'- uCGAAGUCGUcCUCCuccCCGuCGUCGGCGg -3'
miRNA:   3'- -GUUUCGGCGaGAGGc--GGC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 31402 0.71 0.527217
Target:  5'- ---cGCCGCgC-CCGCCGCGCCcGCc -3'
miRNA:   3'- guuuCGGCGaGaGGCGGCGCGGcUGc -5'
10973 5' -60.3 NC_002794.1 + 32302 0.74 0.356528
Target:  5'- ---cGCCGCgg-CgGCCGCGCCGGCc -3'
miRNA:   3'- guuuCGGCGagaGgCGGCGCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 32511 0.73 0.395501
Target:  5'- ---uGCCgGCUC-CCGCCGUGCCGGUGa -3'
miRNA:   3'- guuuCGG-CGAGaGGCGGCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 32563 0.66 0.809712
Target:  5'- --cAGCCGCggauaGUCGCGCgCGGCGg -3'
miRNA:   3'- guuUCGGCGagaggCGGCGCG-GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 32798 0.71 0.508572
Target:  5'- --cGGUCGgUCUUCGCCGCGaCCGuCGu -3'
miRNA:   3'- guuUCGGCgAGAGGCGGCGC-GGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.