miRNA display CGI


Results 1 - 20 of 318 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10973 5' -60.3 NC_002794.1 + 195570 0.66 0.792691
Target:  5'- -cGAGCCGCccCgaccgaCCGCCGgaccgGCCGACGc -3'
miRNA:   3'- guUUCGGCGa-Ga-----GGCGGCg----CGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 194853 0.68 0.662339
Target:  5'- --cAGCCGCaccgUCUGcCCGCGCCGcGCGa -3'
miRNA:   3'- guuUCGGCGag--AGGC-GGCGCGGC-UGC- -5'
10973 5' -60.3 NC_002794.1 + 194189 0.66 0.775145
Target:  5'- ---cGCaCGUUCaCCGCCGCGugguacgacaCCGGCGg -3'
miRNA:   3'- guuuCG-GCGAGaGGCGGCGC----------GGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 194044 0.7 0.565218
Target:  5'- ---cGCCGC-CgCCGCCGCcGCCGcCGa -3'
miRNA:   3'- guuuCGGCGaGaGGCGGCG-CGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 193996 0.71 0.487483
Target:  5'- ---cGCCGCccccggcuucgccuUCgcggCCGCCGcCGCCGGCGc -3'
miRNA:   3'- guuuCGGCG--------------AGa---GGCGGC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 193407 0.68 0.691359
Target:  5'- ---cGCuCGC-CUCCGCCGCcGCCGcCc -3'
miRNA:   3'- guuuCG-GCGaGAGGCGGCG-CGGCuGc -5'
10973 5' -60.3 NC_002794.1 + 193296 0.66 0.818007
Target:  5'- --uAGUCGCcgUCCGCucCGCGCCGcACGc -3'
miRNA:   3'- guuUCGGCGagAGGCG--GCGCGGC-UGC- -5'
10973 5' -60.3 NC_002794.1 + 192638 0.75 0.320333
Target:  5'- --cGGCCGCUC-CaGCCGCGCCGcCGc -3'
miRNA:   3'- guuUCGGCGAGaGgCGGCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 192600 0.66 0.783102
Target:  5'- ---cGCCGaccacuuCUCUCCGCCagGUGCgGACa -3'
miRNA:   3'- guuuCGGC-------GAGAGGCGG--CGCGgCUGc -5'
10973 5' -60.3 NC_002794.1 + 192391 0.68 0.691359
Target:  5'- ----aCCGC-CaCCGCCGCGCCGGgGu -3'
miRNA:   3'- guuucGGCGaGaGGCGGCGCGGCUgC- -5'
10973 5' -60.3 NC_002794.1 + 192357 0.68 0.691359
Target:  5'- ----uCgGC-CUCCGCCGcCGCCGACc -3'
miRNA:   3'- guuucGgCGaGAGGCGGC-GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 192227 0.67 0.719975
Target:  5'- aCGAAGaaGaUCggcgCUGCCGuCGCCGACGg -3'
miRNA:   3'- -GUUUCggCgAGa---GGCGGC-GCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 191814 0.66 0.809712
Target:  5'- --cGGCCGCUCgaggaCCGCgaGCucGCuCGACGg -3'
miRNA:   3'- guuUCGGCGAGa----GGCGg-CG--CG-GCUGC- -5'
10973 5' -60.3 NC_002794.1 + 190664 0.72 0.445743
Target:  5'- ---cGUCGCgC-CCGCCGCGCCGcCGg -3'
miRNA:   3'- guuuCGGCGaGaGGCGGCGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 190287 0.66 0.801271
Target:  5'- aGAAGuCCGUg--UCGaaGCGCCGGCGg -3'
miRNA:   3'- gUUUC-GGCGagaGGCggCGCGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 190163 0.69 0.613625
Target:  5'- --cGGCgGCUCUccucgaacacCCGCCGCGCCa--- -3'
miRNA:   3'- guuUCGgCGAGA----------GGCGGCGCGGcugc -5'
10973 5' -60.3 NC_002794.1 + 189971 0.66 0.78398
Target:  5'- -cGGGCCGC---CCGCuCGC-CCGACGg -3'
miRNA:   3'- guUUCGGCGagaGGCG-GCGcGGCUGC- -5'
10973 5' -60.3 NC_002794.1 + 189886 0.67 0.747975
Target:  5'- --cGGcCCGCUCgggcCCGCCgucaGCGCCGcCGc -3'
miRNA:   3'- guuUC-GGCGAGa---GGCGG----CGCGGCuGC- -5'
10973 5' -60.3 NC_002794.1 + 189857 0.68 0.68172
Target:  5'- gCGGAGCCG-UCggcgUCGUCGcCGCCGACc -3'
miRNA:   3'- -GUUUCGGCgAGa---GGCGGC-GCGGCUGc -5'
10973 5' -60.3 NC_002794.1 + 189377 0.78 0.213084
Target:  5'- -uGAGCCGCUCgCCGCUGUGCuCGGCc -3'
miRNA:   3'- guUUCGGCGAGaGGCGGCGCG-GCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.