miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 92073 0.66 0.949148
Target:  5'- gGCCGGUGCu-GCcaGUCGUgcuaccagacggccuUCGUGCGg -3'
miRNA:   3'- -UGGCCAUGuuCGucUAGCG---------------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 148144 0.66 0.949148
Target:  5'- cGCCGGgGCGAGgGcGGUCGCgacggaaggagggggUCGCGaCGg -3'
miRNA:   3'- -UGGCCaUGUUCgU-CUAGCG---------------AGCGC-GC- -5'
10974 3' -56 NC_002794.1 + 149278 0.66 0.947472
Target:  5'- cGCCGGcgGCGcGGCGGcUCGCUCaCGgGg -3'
miRNA:   3'- -UGGCCa-UGU-UCGUCuAGCGAGcGCgC- -5'
10974 3' -56 NC_002794.1 + 119046 0.66 0.947472
Target:  5'- aGCCGGccCGAGaAGAUCuuguaGCUCGCGUc -3'
miRNA:   3'- -UGGCCauGUUCgUCUAG-----CGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 94194 0.66 0.947472
Target:  5'- uCCGGc-CAAGCGGuugCGCUUGUGaCGg -3'
miRNA:   3'- uGGCCauGUUCGUCua-GCGAGCGC-GC- -5'
10974 3' -56 NC_002794.1 + 102578 0.66 0.947472
Target:  5'- gUCGGUGCugucGCAGGaCGUgUCGCGCu -3'
miRNA:   3'- uGGCCAUGuu--CGUCUaGCG-AGCGCGc -5'
10974 3' -56 NC_002794.1 + 60624 0.66 0.943126
Target:  5'- aACCGG-ACGGGCGGAcccggCGC-CG-GCGg -3'
miRNA:   3'- -UGGCCaUGUUCGUCUa----GCGaGCgCGC- -5'
10974 3' -56 NC_002794.1 + 35969 0.66 0.943126
Target:  5'- gACCGG-ACGGGCc---CGCUCGCGg- -3'
miRNA:   3'- -UGGCCaUGUUCGucuaGCGAGCGCgc -5'
10974 3' -56 NC_002794.1 + 56269 0.66 0.940409
Target:  5'- cACCGGgcCGAGCAGcaggcggcagagcacGaUGCgCGCGCGg -3'
miRNA:   3'- -UGGCCauGUUCGUC---------------UaGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 114614 0.66 0.938552
Target:  5'- uCCaGGUgGCGcAGCAGGUC-CUCGgCGCGg -3'
miRNA:   3'- uGG-CCA-UGU-UCGUCUAGcGAGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 11884 0.66 0.938552
Target:  5'- gACgGGUccuCGAGCGGGUucgUGCUCGC-CGg -3'
miRNA:   3'- -UGgCCAu--GUUCGUCUA---GCGAGCGcGC- -5'
10974 3' -56 NC_002794.1 + 38150 0.66 0.938552
Target:  5'- aGCaggaGGUagGCGAGCAGGcggcugCGCUCG-GCGa -3'
miRNA:   3'- -UGg---CCA--UGUUCGUCUa-----GCGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 25116 0.66 0.938552
Target:  5'- gACCGGUcgagauCGAGCGGG--GCaCGCGCGc -3'
miRNA:   3'- -UGGCCAu-----GUUCGUCUagCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 40832 0.66 0.938552
Target:  5'- gACCGGUGCGccuGCcGA-C-CUCGCGCu -3'
miRNA:   3'- -UGGCCAUGUu--CGuCUaGcGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 138134 0.66 0.938552
Target:  5'- cGCCGGUcuCGGGCGGcgGUUuCUUGCGCa -3'
miRNA:   3'- -UGGCCAu-GUUCGUC--UAGcGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 143837 0.66 0.938552
Target:  5'- gGCCGGUccgacgccuccgGcCAGGC-GAUCGC-CGcCGCGg -3'
miRNA:   3'- -UGGCCA------------U-GUUCGuCUAGCGaGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 104067 0.66 0.934239
Target:  5'- aACCGGgcuCGAucagguucagcccguGCAGAUCGagcagcugcgugaaCUCGCGCa -3'
miRNA:   3'- -UGGCCau-GUU---------------CGUCUAGC--------------GAGCGCGc -5'
10974 3' -56 NC_002794.1 + 92231 0.66 0.933255
Target:  5'- cGCCGGcgACGccaaggagcccucGGCGGcGUCGCUgGCgGCGg -3'
miRNA:   3'- -UGGCCa-UGU-------------UCGUC-UAGCGAgCG-CGC- -5'
10974 3' -56 NC_002794.1 + 106945 0.66 0.928714
Target:  5'- gGCCGGcgGCGccuGgAGAcacgcgUCGcCUCGCGCGg -3'
miRNA:   3'- -UGGCCa-UGUu--CgUCU------AGC-GAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 186291 0.66 0.928714
Target:  5'- cACCGcGgcCAGGCGGccgGUCGCcgcggCGCGCu -3'
miRNA:   3'- -UGGC-CauGUUCGUC---UAGCGa----GCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.