Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10974 | 3' | -56 | NC_002794.1 | + | 156002 | 0.66 | 0.927159 |
Target: 5'- cUCGG-ACGAGCgacgggggucucauGGGUCGCagccgucgcgUCGCGCGa -3' miRNA: 3'- uGGCCaUGUUCG--------------UCUAGCG----------AGCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 25116 | 0.66 | 0.938552 |
Target: 5'- gACCGGUcgagauCGAGCGGG--GCaCGCGCGc -3' miRNA: 3'- -UGGCCAu-----GUUCGUCUagCGaGCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 38150 | 0.66 | 0.938552 |
Target: 5'- aGCaggaGGUagGCGAGCAGGcggcugCGCUCG-GCGa -3' miRNA: 3'- -UGg---CCA--UGUUCGUCUa-----GCGAGCgCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 11884 | 0.66 | 0.938552 |
Target: 5'- gACgGGUccuCGAGCGGGUucgUGCUCGC-CGg -3' miRNA: 3'- -UGgCCAu--GUUCGUCUA---GCGAGCGcGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 114614 | 0.66 | 0.938552 |
Target: 5'- uCCaGGUgGCGcAGCAGGUC-CUCGgCGCGg -3' miRNA: 3'- uGG-CCA-UGU-UCGUCUAGcGAGC-GCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 92231 | 0.66 | 0.933255 |
Target: 5'- cGCCGGcgACGccaaggagcccucGGCGGcGUCGCUgGCgGCGg -3' miRNA: 3'- -UGGCCa-UGU-------------UCGUC-UAGCGAgCG-CGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 104067 | 0.66 | 0.934239 |
Target: 5'- aACCGGgcuCGAucagguucagcccguGCAGAUCGagcagcugcgugaaCUCGCGCa -3' miRNA: 3'- -UGGCCau-GUU---------------CGUCUAGC--------------GAGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 106945 | 0.66 | 0.928714 |
Target: 5'- gGCCGGcgGCGccuGgAGAcacgcgUCGcCUCGCGCGg -3' miRNA: 3'- -UGGCCa-UGUu--CgUCU------AGC-GAGCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 186291 | 0.66 | 0.928714 |
Target: 5'- cACCGcGgcCAGGCGGccgGUCGCcgcggCGCGCu -3' miRNA: 3'- -UGGC-CauGUUCGUC---UAGCGa----GCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 40832 | 0.66 | 0.938552 |
Target: 5'- gACCGGUGCGccuGCcGA-C-CUCGCGCu -3' miRNA: 3'- -UGGCCAUGUu--CGuCUaGcGAGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 138134 | 0.66 | 0.938552 |
Target: 5'- cGCCGGUcuCGGGCGGcgGUUuCUUGCGCa -3' miRNA: 3'- -UGGCCAu-GUUCGUC--UAGcGAGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 56269 | 0.66 | 0.940409 |
Target: 5'- cACCGGgcCGAGCAGcaggcggcagagcacGaUGCgCGCGCGg -3' miRNA: 3'- -UGGCCauGUUCGUC---------------UaGCGaGCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 92073 | 0.66 | 0.949148 |
Target: 5'- gGCCGGUGCu-GCcaGUCGUgcuaccagacggccuUCGUGCGg -3' miRNA: 3'- -UGGCCAUGuuCGucUAGCG---------------AGCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 148144 | 0.66 | 0.949148 |
Target: 5'- cGCCGGgGCGAGgGcGGUCGCgacggaaggagggggUCGCGaCGg -3' miRNA: 3'- -UGGCCaUGUUCgU-CUAGCG---------------AGCGC-GC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 119046 | 0.66 | 0.947472 |
Target: 5'- aGCCGGccCGAGaAGAUCuuguaGCUCGCGUc -3' miRNA: 3'- -UGGCCauGUUCgUCUAG-----CGAGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 94194 | 0.66 | 0.947472 |
Target: 5'- uCCGGc-CAAGCGGuugCGCUUGUGaCGg -3' miRNA: 3'- uGGCCauGUUCGUCua-GCGAGCGC-GC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 102578 | 0.66 | 0.947472 |
Target: 5'- gUCGGUGCugucGCAGGaCGUgUCGCGCu -3' miRNA: 3'- uGGCCAUGuu--CGUCUaGCG-AGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 35969 | 0.66 | 0.943126 |
Target: 5'- gACCGG-ACGGGCc---CGCUCGCGg- -3' miRNA: 3'- -UGGCCaUGUUCGucuaGCGAGCGCgc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 60624 | 0.66 | 0.943126 |
Target: 5'- aACCGG-ACGGGCGGAcccggCGC-CG-GCGg -3' miRNA: 3'- -UGGCCaUGUUCGUCUa----GCGaGCgCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 143837 | 0.66 | 0.938552 |
Target: 5'- gGCCGGUccgacgccuccgGcCAGGC-GAUCGC-CGcCGCGg -3' miRNA: 3'- -UGGCCA------------U-GUUCGuCUAGCGaGC-GCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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