miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 35969 0.66 0.943126
Target:  5'- gACCGG-ACGGGCc---CGCUCGCGg- -3'
miRNA:   3'- -UGGCCaUGUUCGucuaGCGAGCGCgc -5'
10974 3' -56 NC_002794.1 + 60624 0.66 0.943126
Target:  5'- aACCGG-ACGGGCGGAcccggCGC-CG-GCGg -3'
miRNA:   3'- -UGGCCaUGUUCGUCUa----GCGaGCgCGC- -5'
10974 3' -56 NC_002794.1 + 143837 0.66 0.938552
Target:  5'- gGCCGGUccgacgccuccgGcCAGGC-GAUCGC-CGcCGCGg -3'
miRNA:   3'- -UGGCCA------------U-GUUCGuCUAGCGaGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 56269 0.66 0.940409
Target:  5'- cACCGGgcCGAGCAGcaggcggcagagcacGaUGCgCGCGCGg -3'
miRNA:   3'- -UGGCCauGUUCGUC---------------UaGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 138134 0.66 0.938552
Target:  5'- cGCCGGUcuCGGGCGGcgGUUuCUUGCGCa -3'
miRNA:   3'- -UGGCCAu-GUUCGUC--UAGcGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 114653 0.67 0.912227
Target:  5'- uGCCGGUGCu-GU---UCGCgCGCGCGc -3'
miRNA:   3'- -UGGCCAUGuuCGucuAGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 136551 0.67 0.906272
Target:  5'- cACCGGgUACucgucucGCAGGU-GCUCGgGCGu -3'
miRNA:   3'- -UGGCC-AUGuu-----CGUCUAgCGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 116067 0.67 0.906272
Target:  5'- gACUGGgguc-GCGGAgCGCUCGgCGCGg -3'
miRNA:   3'- -UGGCCauguuCGUCUaGCGAGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 34255 0.67 0.906272
Target:  5'- uGCCGccGCAGGCGGAcCGCgCGCagGCGg -3'
miRNA:   3'- -UGGCcaUGUUCGUCUaGCGaGCG--CGC- -5'
10974 3' -56 NC_002794.1 + 78763 0.67 0.910464
Target:  5'- gACCGGaaGCAagcgcAGCAGGUgGCgcaccaccuccguaUCGCGCGu -3'
miRNA:   3'- -UGGCCa-UGU-----UCGUCUAgCG--------------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 99584 0.67 0.917953
Target:  5'- --gGGUGCGgagggcgcggcGGCGGcgcgCGCUCGCGCc -3'
miRNA:   3'- uggCCAUGU-----------UCGUCua--GCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 153033 0.67 0.917953
Target:  5'- gACgGGaACGAcGCGGGUCcCUCGgGCGg -3'
miRNA:   3'- -UGgCCaUGUU-CGUCUAGcGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 142399 0.67 0.917953
Target:  5'- -gCGGUGCAGGCGGcGUCgGCggcgccggGCGCGa -3'
miRNA:   3'- ugGCCAUGUUCGUC-UAG-CGag------CGCGC- -5'
10974 3' -56 NC_002794.1 + 177721 0.67 0.917953
Target:  5'- -gCGGUcCAcggGGCGGAUCcgaccgaCUCGCGCGa -3'
miRNA:   3'- ugGCCAuGU---UCGUCUAGc------GAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 149657 0.67 0.917953
Target:  5'- cGCCGaGgaggcCGAGCGGGggCGCgUCGCGCu -3'
miRNA:   3'- -UGGC-Cau---GUUCGUCUa-GCG-AGCGCGc -5'
10974 3' -56 NC_002794.1 + 116802 0.68 0.865883
Target:  5'- aGCCGGcucggGCGccguagcGCGGGUCGCUcuggucccgggaCGCGCGg -3'
miRNA:   3'- -UGGCCa----UGUu------CGUCUAGCGA------------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 115620 0.68 0.873151
Target:  5'- cGCCGGgagGCGGGuCAGGUgGUUCaggGCGUGa -3'
miRNA:   3'- -UGGCCa--UGUUC-GUCUAgCGAG---CGCGC- -5'
10974 3' -56 NC_002794.1 + 50451 0.68 0.873151
Target:  5'- cACCcGUGCc-GCAGAUCGCagaggugCGUGCGa -3'
miRNA:   3'- -UGGcCAUGuuCGUCUAGCGa------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 88958 0.68 0.887055
Target:  5'- cGCuCGGUACGAGCguggccgccGGAUCG-UCGCgGCa -3'
miRNA:   3'- -UG-GCCAUGUUCG---------UCUAGCgAGCG-CGc -5'
10974 3' -56 NC_002794.1 + 183592 0.68 0.865883
Target:  5'- -aCGGUGgGGGCGGAgggggGCcgCGCGCGg -3'
miRNA:   3'- ugGCCAUgUUCGUCUag---CGa-GCGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.