miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 141819 0.86 0.125376
Target:  5'- aGCCGGUuggacgacgACGAGCGGAUCGCUCG-GCGg -3'
miRNA:   3'- -UGGCCA---------UGUUCGUCUAGCGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 130008 0.76 0.434984
Target:  5'- cCCGGaGCGuGCGGGUCGgcCUCGCGCGa -3'
miRNA:   3'- uGGCCaUGUuCGUCUAGC--GAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 106347 0.76 0.461907
Target:  5'- cGCCGGgucgacgGCGGGCGGG-CGCcgguUCGCGCGg -3'
miRNA:   3'- -UGGCCa------UGUUCGUCUaGCG----AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 13108 0.75 0.488743
Target:  5'- --aGGUGCGuucGGCGGGgucgccgcgcggcUCGCUCGCGCGg -3'
miRNA:   3'- uggCCAUGU---UCGUCU-------------AGCGAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 43005 0.73 0.597021
Target:  5'- cACCGGUcCGAguagcuccGCAGGUCGUcggccuccaUCGCGCGg -3'
miRNA:   3'- -UGGCCAuGUU--------CGUCUAGCG---------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 183046 0.73 0.597021
Target:  5'- aGCaCGcGUAguAGCccAGGUCGCUCGCGCu -3'
miRNA:   3'- -UG-GC-CAUguUCG--UCUAGCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 188274 0.72 0.677349
Target:  5'- gGCCGGguaGCGgauGCAGggCGC-CGCGCGc -3'
miRNA:   3'- -UGGCCa--UGUu--CGUCuaGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 104593 0.72 0.677349
Target:  5'- -gCGGcACGAGUgcaGGAUgCGCUCGCGCa -3'
miRNA:   3'- ugGCCaUGUUCG---UCUA-GCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 14462 0.71 0.697232
Target:  5'- gACCGuGU-CGAGCGGcgCGC-CGCGCu -3'
miRNA:   3'- -UGGC-CAuGUUCGUCuaGCGaGCGCGc -5'
10974 3' -56 NC_002794.1 + 39576 0.71 0.704145
Target:  5'- cCCGugcucaaGUACGAGCGGGUCGCggccucgaccuaCGCGCGc -3'
miRNA:   3'- uGGC-------CAUGUUCGUCUAGCGa-----------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 101805 0.71 0.707099
Target:  5'- cGCUGGUugGcgcAGCGGcgCGCcgUGCGCGa -3'
miRNA:   3'- -UGGCCAugU---UCGUCuaGCGa-GCGCGC- -5'
10974 3' -56 NC_002794.1 + 36955 0.71 0.716904
Target:  5'- cGCgCGGcgGCAGGCAG-UCGCgcaggaggaUCGCGCGc -3'
miRNA:   3'- -UG-GCCa-UGUUCGUCuAGCG---------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 134712 0.71 0.716904
Target:  5'- gGCCGGaguUGCGGGCucuGAUCGCgagGCGCu -3'
miRNA:   3'- -UGGCC---AUGUUCGu--CUAGCGag-CGCGc -5'
10974 3' -56 NC_002794.1 + 194973 0.71 0.716904
Target:  5'- cGCCGGcucgUACAGGCAcagCGC-CGCGCGc -3'
miRNA:   3'- -UGGCC----AUGUUCGUcuaGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 61172 0.71 0.716904
Target:  5'- uCCGGaucgGC-GGCuGGUCGCUCGUGCu -3'
miRNA:   3'- uGGCCa---UGuUCGuCUAGCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 140798 0.71 0.726639
Target:  5'- uCCGuUACAcggucuauccGGUAGAUCGCUacCGCGCGg -3'
miRNA:   3'- uGGCcAUGU----------UCGUCUAGCGA--GCGCGC- -5'
10974 3' -56 NC_002794.1 + 187335 0.7 0.78309
Target:  5'- aGCCGGaGC-AGCAGcccGUCGUUCGCGg- -3'
miRNA:   3'- -UGGCCaUGuUCGUC---UAGCGAGCGCgc -5'
10974 3' -56 NC_002794.1 + 86677 0.7 0.78309
Target:  5'- gACCGGUuggaACGAGCGGGaccgagcccggUCGCUCGU-CGa -3'
miRNA:   3'- -UGGCCA----UGUUCGUCU-----------AGCGAGCGcGC- -5'
10974 3' -56 NC_002794.1 + 106449 0.7 0.800951
Target:  5'- -gCGGUGCAGGCGGAccUCG-UCGcCGUGa -3'
miRNA:   3'- ugGCCAUGUUCGUCU--AGCgAGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 144882 0.7 0.800951
Target:  5'- uCgGGUGCgGGGCgAGA-CGCUCGCGCc -3'
miRNA:   3'- uGgCCAUG-UUCG-UCUaGCGAGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.