miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 112114 0.69 0.815672
Target:  5'- gGCCGGgacgacgGCGcggggagguagaucGGCAGAUCGUaCGCGUa -3'
miRNA:   3'- -UGGCCa------UGU--------------UCGUCUAGCGaGCGCGc -5'
10974 3' -56 NC_002794.1 + 49668 0.69 0.818222
Target:  5'- gACCGGUacgcgaagcGCAAGCGGA-CGagUCGCGuCGg -3'
miRNA:   3'- -UGGCCA---------UGUUCGUCUaGCg-AGCGC-GC- -5'
10974 3' -56 NC_002794.1 + 145316 0.69 0.826616
Target:  5'- aACCGGcGCGcGGCGGGcggCGCUCGgGCc -3'
miRNA:   3'- -UGGCCaUGU-UCGUCUa--GCGAGCgCGc -5'
10974 3' -56 NC_002794.1 + 116976 0.69 0.834839
Target:  5'- -aCGGgcCcAGCAGGUCGUUCGCcguccGCGg -3'
miRNA:   3'- ugGCCauGuUCGUCUAGCGAGCG-----CGC- -5'
10974 3' -56 NC_002794.1 + 40549 0.69 0.834839
Target:  5'- gGCCGGcgGCAugAGCuucUCGUUCGCGCc -3'
miRNA:   3'- -UGGCCa-UGU--UCGucuAGCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 143301 0.69 0.842088
Target:  5'- gGCgGGUGCAgcgcGGCGGGauggaagUCGgUCGCGUGc -3'
miRNA:   3'- -UGgCCAUGU----UCGUCU-------AGCgAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 126223 0.68 0.849967
Target:  5'- -gCGGUACAagaucgggaccguGGC-GAUCGUggCGCGCGa -3'
miRNA:   3'- ugGCCAUGU-------------UCGuCUAGCGa-GCGCGC- -5'
10974 3' -56 NC_002794.1 + 122948 0.68 0.850744
Target:  5'- aACCGGUGCGgcuggagcgugAGCcugGGGUgGCUguaCGCGCGc -3'
miRNA:   3'- -UGGCCAUGU-----------UCG---UCUAgCGA---GCGCGC- -5'
10974 3' -56 NC_002794.1 + 182571 0.68 0.850744
Target:  5'- cACCGGgaucuccgUGCGGGCGacgauGGUCGCguugUCGCGCa -3'
miRNA:   3'- -UGGCC--------AUGUUCGU-----CUAGCG----AGCGCGc -5'
10974 3' -56 NC_002794.1 + 61276 0.68 0.858413
Target:  5'- cGCCcGUACGAGCAGGUC---CGCGCc -3'
miRNA:   3'- -UGGcCAUGUUCGUCUAGcgaGCGCGc -5'
10974 3' -56 NC_002794.1 + 111156 0.68 0.858413
Target:  5'- aGCgGGU-CAGGCAGA-CGCggugcagggCGCGCa -3'
miRNA:   3'- -UGgCCAuGUUCGUCUaGCGa--------GCGCGc -5'
10974 3' -56 NC_002794.1 + 104222 0.68 0.861425
Target:  5'- uGCgGGUACAGGCuuucgcacgagauggAGAUCuugaGCUCGgGCa -3'
miRNA:   3'- -UGgCCAUGUUCG---------------UCUAG----CGAGCgCGc -5'
10974 3' -56 NC_002794.1 + 183592 0.68 0.865883
Target:  5'- -aCGGUGgGGGCGGAgggggGCcgCGCGCGg -3'
miRNA:   3'- ugGCCAUgUUCGUCUag---CGa-GCGCGC- -5'
10974 3' -56 NC_002794.1 + 116802 0.68 0.865883
Target:  5'- aGCCGGcucggGCGccguagcGCGGGUCGCUcuggucccgggaCGCGCGg -3'
miRNA:   3'- -UGGCCa----UGUu------CGUCUAGCGA------------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 33159 0.68 0.865883
Target:  5'- gACCGuGUuccGCAAGCAGAUCuucuacggGCUgUGCGUGa -3'
miRNA:   3'- -UGGC-CA---UGUUCGUCUAG--------CGA-GCGCGC- -5'
10974 3' -56 NC_002794.1 + 115620 0.68 0.873151
Target:  5'- cGCCGGgagGCGGGuCAGGUgGUUCaggGCGUGa -3'
miRNA:   3'- -UGGCCa--UGUUC-GUCUAgCGAG---CGCGC- -5'
10974 3' -56 NC_002794.1 + 50451 0.68 0.873151
Target:  5'- cACCcGUGCc-GCAGAUCGCagaggugCGUGCGa -3'
miRNA:   3'- -UGGcCAUGuuCGUCUAGCGa------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 47874 0.68 0.880209
Target:  5'- gGCCaggacGUACGuGUAGAggcucaGCUCGCGCGg -3'
miRNA:   3'- -UGGc----CAUGUuCGUCUag----CGAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 88958 0.68 0.887055
Target:  5'- cGCuCGGUACGAGCguggccgccGGAUCG-UCGCgGCa -3'
miRNA:   3'- -UG-GCCAUGUUCG---------UCUAGCgAGCG-CGc -5'
10974 3' -56 NC_002794.1 + 116067 0.67 0.906272
Target:  5'- gACUGGgguc-GCGGAgCGCUCGgCGCGg -3'
miRNA:   3'- -UGGCCauguuCGUCUaGCGAGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.