miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 137941 0.66 0.928714
Target:  5'- aGCUGGagGCAgcGGCGGAUgCGUUCGC-CGa -3'
miRNA:   3'- -UGGCCa-UGU--UCGUCUA-GCGAGCGcGC- -5'
10974 3' -56 NC_002794.1 + 156002 0.66 0.927159
Target:  5'- cUCGG-ACGAGCgacgggggucucauGGGUCGCagccgucgcgUCGCGCGa -3'
miRNA:   3'- uGGCCaUGUUCG--------------UCUAGCG----------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 45912 0.66 0.923449
Target:  5'- cGCCGGcacCGGGCGacGAg-GCUCGCGCu -3'
miRNA:   3'- -UGGCCau-GUUCGU--CUagCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 45427 0.66 0.923449
Target:  5'- cACCGccGCGAGCGucUCGCggacccggUCGCGCGu -3'
miRNA:   3'- -UGGCcaUGUUCGUcuAGCG--------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 45300 0.66 0.923449
Target:  5'- --aGGcgACGuGCAGAUCGUUgCGCGCa -3'
miRNA:   3'- uggCCa-UGUuCGUCUAGCGA-GCGCGc -5'
10974 3' -56 NC_002794.1 + 99584 0.67 0.917953
Target:  5'- --gGGUGCGgagggcgcggcGGCGGcgcgCGCUCGCGCc -3'
miRNA:   3'- uggCCAUGU-----------UCGUCua--GCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 153033 0.67 0.917953
Target:  5'- gACgGGaACGAcGCGGGUCcCUCGgGCGg -3'
miRNA:   3'- -UGgCCaUGUU-CGUCUAGcGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 142399 0.67 0.917953
Target:  5'- -gCGGUGCAGGCGGcGUCgGCggcgccggGCGCGa -3'
miRNA:   3'- ugGCCAUGUUCGUC-UAG-CGag------CGCGC- -5'
10974 3' -56 NC_002794.1 + 177721 0.67 0.917953
Target:  5'- -gCGGUcCAcggGGCGGAUCcgaccgaCUCGCGCGa -3'
miRNA:   3'- ugGCCAuGU---UCGUCUAGc------GAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 149657 0.67 0.917953
Target:  5'- cGCCGaGgaggcCGAGCGGGggCGCgUCGCGCu -3'
miRNA:   3'- -UGGC-Cau---GUUCGUCUa-GCG-AGCGCGc -5'
10974 3' -56 NC_002794.1 + 114653 0.67 0.912227
Target:  5'- uGCCGGUGCu-GU---UCGCgCGCGCGc -3'
miRNA:   3'- -UGGCCAUGuuCGucuAGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 78763 0.67 0.910464
Target:  5'- gACCGGaaGCAagcgcAGCAGGUgGCgcaccaccuccguaUCGCGCGu -3'
miRNA:   3'- -UGGCCa-UGU-----UCGUCUAgCG--------------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 136551 0.67 0.906272
Target:  5'- cACCGGgUACucgucucGCAGGU-GCUCGgGCGu -3'
miRNA:   3'- -UGGCC-AUGuu-----CGUCUAgCGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 116067 0.67 0.906272
Target:  5'- gACUGGgguc-GCGGAgCGCUCGgCGCGg -3'
miRNA:   3'- -UGGCCauguuCGUCUaGCGAGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 34255 0.67 0.906272
Target:  5'- uGCCGccGCAGGCGGAcCGCgCGCagGCGg -3'
miRNA:   3'- -UGGCcaUGUUCGUCUaGCGaGCG--CGC- -5'
10974 3' -56 NC_002794.1 + 88958 0.68 0.887055
Target:  5'- cGCuCGGUACGAGCguggccgccGGAUCG-UCGCgGCa -3'
miRNA:   3'- -UG-GCCAUGUUCG---------UCUAGCgAGCG-CGc -5'
10974 3' -56 NC_002794.1 + 47874 0.68 0.880209
Target:  5'- gGCCaggacGUACGuGUAGAggcucaGCUCGCGCGg -3'
miRNA:   3'- -UGGc----CAUGUuCGUCUag----CGAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 50451 0.68 0.873151
Target:  5'- cACCcGUGCc-GCAGAUCGCagaggugCGUGCGa -3'
miRNA:   3'- -UGGcCAUGuuCGUCUAGCGa------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 115620 0.68 0.873151
Target:  5'- cGCCGGgagGCGGGuCAGGUgGUUCaggGCGUGa -3'
miRNA:   3'- -UGGCCa--UGUUC-GUCUAgCGAG---CGCGC- -5'
10974 3' -56 NC_002794.1 + 183592 0.68 0.865883
Target:  5'- -aCGGUGgGGGCGGAgggggGCcgCGCGCGg -3'
miRNA:   3'- ugGCCAUgUUCGUCUag---CGa-GCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.