Results 41 - 60 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10974 | 3' | -56 | NC_002794.1 | + | 183592 | 0.68 | 0.865883 |
Target: 5'- -aCGGUGgGGGCGGAgggggGCcgCGCGCGg -3' miRNA: 3'- ugGCCAUgUUCGUCUag---CGa-GCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 33159 | 0.68 | 0.865883 |
Target: 5'- gACCGuGUuccGCAAGCAGAUCuucuacggGCUgUGCGUGa -3' miRNA: 3'- -UGGC-CA---UGUUCGUCUAG--------CGA-GCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 104222 | 0.68 | 0.861425 |
Target: 5'- uGCgGGUACAGGCuuucgcacgagauggAGAUCuugaGCUCGgGCa -3' miRNA: 3'- -UGgCCAUGUUCG---------------UCUAG----CGAGCgCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 111156 | 0.68 | 0.858413 |
Target: 5'- aGCgGGU-CAGGCAGA-CGCggugcagggCGCGCa -3' miRNA: 3'- -UGgCCAuGUUCGUCUaGCGa--------GCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 61276 | 0.68 | 0.858413 |
Target: 5'- cGCCcGUACGAGCAGGUC---CGCGCc -3' miRNA: 3'- -UGGcCAUGUUCGUCUAGcgaGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 122948 | 0.68 | 0.850744 |
Target: 5'- aACCGGUGCGgcuggagcgugAGCcugGGGUgGCUguaCGCGCGc -3' miRNA: 3'- -UGGCCAUGU-----------UCG---UCUAgCGA---GCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 182571 | 0.68 | 0.850744 |
Target: 5'- cACCGGgaucuccgUGCGGGCGacgauGGUCGCguugUCGCGCa -3' miRNA: 3'- -UGGCC--------AUGUUCGU-----CUAGCG----AGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 126223 | 0.68 | 0.849967 |
Target: 5'- -gCGGUACAagaucgggaccguGGC-GAUCGUggCGCGCGa -3' miRNA: 3'- ugGCCAUGU-------------UCGuCUAGCGa-GCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 143301 | 0.69 | 0.842088 |
Target: 5'- gGCgGGUGCAgcgcGGCGGGauggaagUCGgUCGCGUGc -3' miRNA: 3'- -UGgCCAUGU----UCGUCU-------AGCgAGCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 116976 | 0.69 | 0.834839 |
Target: 5'- -aCGGgcCcAGCAGGUCGUUCGCcguccGCGg -3' miRNA: 3'- ugGCCauGuUCGUCUAGCGAGCG-----CGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 40549 | 0.69 | 0.834839 |
Target: 5'- gGCCGGcgGCAugAGCuucUCGUUCGCGCc -3' miRNA: 3'- -UGGCCa-UGU--UCGucuAGCGAGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 145316 | 0.69 | 0.826616 |
Target: 5'- aACCGGcGCGcGGCGGGcggCGCUCGgGCc -3' miRNA: 3'- -UGGCCaUGU-UCGUCUa--GCGAGCgCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 49668 | 0.69 | 0.818222 |
Target: 5'- gACCGGUacgcgaagcGCAAGCGGA-CGagUCGCGuCGg -3' miRNA: 3'- -UGGCCA---------UGUUCGUCUaGCg-AGCGC-GC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 112114 | 0.69 | 0.815672 |
Target: 5'- gGCCGGgacgacgGCGcggggagguagaucGGCAGAUCGUaCGCGUa -3' miRNA: 3'- -UGGCCa------UGU--------------UCGUCUAGCGaGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 144882 | 0.7 | 0.800951 |
Target: 5'- uCgGGUGCgGGGCgAGA-CGCUCGCGCc -3' miRNA: 3'- uGgCCAUG-UUCG-UCUaGCGAGCGCGc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 106449 | 0.7 | 0.800951 |
Target: 5'- -gCGGUGCAGGCGGAccUCG-UCGcCGUGa -3' miRNA: 3'- ugGCCAUGUUCGUCU--AGCgAGC-GCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 187335 | 0.7 | 0.78309 |
Target: 5'- aGCCGGaGC-AGCAGcccGUCGUUCGCGg- -3' miRNA: 3'- -UGGCCaUGuUCGUC---UAGCGAGCGCgc -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 86677 | 0.7 | 0.78309 |
Target: 5'- gACCGGUuggaACGAGCGGGaccgagcccggUCGCUCGU-CGa -3' miRNA: 3'- -UGGCCA----UGUUCGUCU-----------AGCGAGCGcGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 140798 | 0.71 | 0.726639 |
Target: 5'- uCCGuUACAcggucuauccGGUAGAUCGCUacCGCGCGg -3' miRNA: 3'- uGGCcAUGU----------UCGUCUAGCGA--GCGCGC- -5' |
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10974 | 3' | -56 | NC_002794.1 | + | 36955 | 0.71 | 0.716904 |
Target: 5'- cGCgCGGcgGCAGGCAG-UCGCgcaggaggaUCGCGCGc -3' miRNA: 3'- -UG-GCCa-UGUUCGUCuAGCG---------AGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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