miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 11884 0.66 0.938552
Target:  5'- gACgGGUccuCGAGCGGGUucgUGCUCGC-CGg -3'
miRNA:   3'- -UGgCCAu--GUUCGUCUA---GCGAGCGcGC- -5'
10974 3' -56 NC_002794.1 + 13108 0.75 0.488743
Target:  5'- --aGGUGCGuucGGCGGGgucgccgcgcggcUCGCUCGCGCGg -3'
miRNA:   3'- uggCCAUGU---UCGUCU-------------AGCGAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 14462 0.71 0.697232
Target:  5'- gACCGuGU-CGAGCGGcgCGC-CGCGCu -3'
miRNA:   3'- -UGGC-CAuGUUCGUCuaGCGaGCGCGc -5'
10974 3' -56 NC_002794.1 + 25116 0.66 0.938552
Target:  5'- gACCGGUcgagauCGAGCGGG--GCaCGCGCGc -3'
miRNA:   3'- -UGGCCAu-----GUUCGUCUagCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 33159 0.68 0.865883
Target:  5'- gACCGuGUuccGCAAGCAGAUCuucuacggGCUgUGCGUGa -3'
miRNA:   3'- -UGGC-CA---UGUUCGUCUAG--------CGA-GCGCGC- -5'
10974 3' -56 NC_002794.1 + 34255 0.67 0.906272
Target:  5'- uGCCGccGCAGGCGGAcCGCgCGCagGCGg -3'
miRNA:   3'- -UGGCcaUGUUCGUCUaGCGaGCG--CGC- -5'
10974 3' -56 NC_002794.1 + 35969 0.66 0.943126
Target:  5'- gACCGG-ACGGGCc---CGCUCGCGg- -3'
miRNA:   3'- -UGGCCaUGUUCGucuaGCGAGCGCgc -5'
10974 3' -56 NC_002794.1 + 36955 0.71 0.716904
Target:  5'- cGCgCGGcgGCAGGCAG-UCGCgcaggaggaUCGCGCGc -3'
miRNA:   3'- -UG-GCCa-UGUUCGUCuAGCG---------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 38150 0.66 0.938552
Target:  5'- aGCaggaGGUagGCGAGCAGGcggcugCGCUCG-GCGa -3'
miRNA:   3'- -UGg---CCA--UGUUCGUCUa-----GCGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 39576 0.71 0.704145
Target:  5'- cCCGugcucaaGUACGAGCGGGUCGCggccucgaccuaCGCGCGc -3'
miRNA:   3'- uGGC-------CAUGUUCGUCUAGCGa-----------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 40549 0.69 0.834839
Target:  5'- gGCCGGcgGCAugAGCuucUCGUUCGCGCc -3'
miRNA:   3'- -UGGCCa-UGU--UCGucuAGCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 40832 0.66 0.938552
Target:  5'- gACCGGUGCGccuGCcGA-C-CUCGCGCu -3'
miRNA:   3'- -UGGCCAUGUu--CGuCUaGcGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 43005 0.73 0.597021
Target:  5'- cACCGGUcCGAguagcuccGCAGGUCGUcggccuccaUCGCGCGg -3'
miRNA:   3'- -UGGCCAuGUU--------CGUCUAGCG---------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 45300 0.66 0.923449
Target:  5'- --aGGcgACGuGCAGAUCGUUgCGCGCa -3'
miRNA:   3'- uggCCa-UGUuCGUCUAGCGA-GCGCGc -5'
10974 3' -56 NC_002794.1 + 45427 0.66 0.923449
Target:  5'- cACCGccGCGAGCGucUCGCggacccggUCGCGCGu -3'
miRNA:   3'- -UGGCcaUGUUCGUcuAGCG--------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 45912 0.66 0.923449
Target:  5'- cGCCGGcacCGGGCGacGAg-GCUCGCGCu -3'
miRNA:   3'- -UGGCCau-GUUCGU--CUagCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 47874 0.68 0.880209
Target:  5'- gGCCaggacGUACGuGUAGAggcucaGCUCGCGCGg -3'
miRNA:   3'- -UGGc----CAUGUuCGUCUag----CGAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 49668 0.69 0.818222
Target:  5'- gACCGGUacgcgaagcGCAAGCGGA-CGagUCGCGuCGg -3'
miRNA:   3'- -UGGCCA---------UGUUCGUCUaGCg-AGCGC-GC- -5'
10974 3' -56 NC_002794.1 + 50451 0.68 0.873151
Target:  5'- cACCcGUGCc-GCAGAUCGCagaggugCGUGCGa -3'
miRNA:   3'- -UGGcCAUGuuCGUCUAGCGa------GCGCGC- -5'
10974 3' -56 NC_002794.1 + 56269 0.66 0.940409
Target:  5'- cACCGGgcCGAGCAGcaggcggcagagcacGaUGCgCGCGCGg -3'
miRNA:   3'- -UGGCCauGUUCGUC---------------UaGCGaGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.