miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 60624 0.66 0.943126
Target:  5'- aACCGG-ACGGGCGGAcccggCGC-CG-GCGg -3'
miRNA:   3'- -UGGCCaUGUUCGUCUa----GCGaGCgCGC- -5'
10974 3' -56 NC_002794.1 + 61172 0.71 0.716904
Target:  5'- uCCGGaucgGC-GGCuGGUCGCUCGUGCu -3'
miRNA:   3'- uGGCCa---UGuUCGuCUAGCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 61276 0.68 0.858413
Target:  5'- cGCCcGUACGAGCAGGUC---CGCGCc -3'
miRNA:   3'- -UGGcCAUGUUCGUCUAGcgaGCGCGc -5'
10974 3' -56 NC_002794.1 + 78763 0.67 0.910464
Target:  5'- gACCGGaaGCAagcgcAGCAGGUgGCgcaccaccuccguaUCGCGCGu -3'
miRNA:   3'- -UGGCCa-UGU-----UCGUCUAgCG--------------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 86677 0.7 0.78309
Target:  5'- gACCGGUuggaACGAGCGGGaccgagcccggUCGCUCGU-CGa -3'
miRNA:   3'- -UGGCCA----UGUUCGUCU-----------AGCGAGCGcGC- -5'
10974 3' -56 NC_002794.1 + 88958 0.68 0.887055
Target:  5'- cGCuCGGUACGAGCguggccgccGGAUCG-UCGCgGCa -3'
miRNA:   3'- -UG-GCCAUGUUCG---------UCUAGCgAGCG-CGc -5'
10974 3' -56 NC_002794.1 + 92073 0.66 0.949148
Target:  5'- gGCCGGUGCu-GCcaGUCGUgcuaccagacggccuUCGUGCGg -3'
miRNA:   3'- -UGGCCAUGuuCGucUAGCG---------------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 92231 0.66 0.933255
Target:  5'- cGCCGGcgACGccaaggagcccucGGCGGcGUCGCUgGCgGCGg -3'
miRNA:   3'- -UGGCCa-UGU-------------UCGUC-UAGCGAgCG-CGC- -5'
10974 3' -56 NC_002794.1 + 94194 0.66 0.947472
Target:  5'- uCCGGc-CAAGCGGuugCGCUUGUGaCGg -3'
miRNA:   3'- uGGCCauGUUCGUCua-GCGAGCGC-GC- -5'
10974 3' -56 NC_002794.1 + 99584 0.67 0.917953
Target:  5'- --gGGUGCGgagggcgcggcGGCGGcgcgCGCUCGCGCc -3'
miRNA:   3'- uggCCAUGU-----------UCGUCua--GCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 101805 0.71 0.707099
Target:  5'- cGCUGGUugGcgcAGCGGcgCGCcgUGCGCGa -3'
miRNA:   3'- -UGGCCAugU---UCGUCuaGCGa-GCGCGC- -5'
10974 3' -56 NC_002794.1 + 102578 0.66 0.947472
Target:  5'- gUCGGUGCugucGCAGGaCGUgUCGCGCu -3'
miRNA:   3'- uGGCCAUGuu--CGUCUaGCG-AGCGCGc -5'
10974 3' -56 NC_002794.1 + 104067 0.66 0.934239
Target:  5'- aACCGGgcuCGAucagguucagcccguGCAGAUCGagcagcugcgugaaCUCGCGCa -3'
miRNA:   3'- -UGGCCau-GUU---------------CGUCUAGC--------------GAGCGCGc -5'
10974 3' -56 NC_002794.1 + 104222 0.68 0.861425
Target:  5'- uGCgGGUACAGGCuuucgcacgagauggAGAUCuugaGCUCGgGCa -3'
miRNA:   3'- -UGgCCAUGUUCG---------------UCUAG----CGAGCgCGc -5'
10974 3' -56 NC_002794.1 + 104593 0.72 0.677349
Target:  5'- -gCGGcACGAGUgcaGGAUgCGCUCGCGCa -3'
miRNA:   3'- ugGCCaUGUUCG---UCUA-GCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 106347 0.76 0.461907
Target:  5'- cGCCGGgucgacgGCGGGCGGG-CGCcgguUCGCGCGg -3'
miRNA:   3'- -UGGCCa------UGUUCGUCUaGCG----AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 106449 0.7 0.800951
Target:  5'- -gCGGUGCAGGCGGAccUCG-UCGcCGUGa -3'
miRNA:   3'- ugGCCAUGUUCGUCU--AGCgAGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 106945 0.66 0.928714
Target:  5'- gGCCGGcgGCGccuGgAGAcacgcgUCGcCUCGCGCGg -3'
miRNA:   3'- -UGGCCa-UGUu--CgUCU------AGC-GAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 111156 0.68 0.858413
Target:  5'- aGCgGGU-CAGGCAGA-CGCggugcagggCGCGCa -3'
miRNA:   3'- -UGgCCAuGUUCGUCUaGCGa--------GCGCGc -5'
10974 3' -56 NC_002794.1 + 112114 0.69 0.815672
Target:  5'- gGCCGGgacgacgGCGcggggagguagaucGGCAGAUCGUaCGCGUa -3'
miRNA:   3'- -UGGCCa------UGU--------------UCGUCUAGCGaGCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.