miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 3' -56 NC_002794.1 + 194973 0.71 0.716904
Target:  5'- cGCCGGcucgUACAGGCAcagCGC-CGCGCGc -3'
miRNA:   3'- -UGGCC----AUGUUCGUcuaGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 188274 0.72 0.677349
Target:  5'- gGCCGGguaGCGgauGCAGggCGC-CGCGCGc -3'
miRNA:   3'- -UGGCCa--UGUu--CGUCuaGCGaGCGCGC- -5'
10974 3' -56 NC_002794.1 + 187335 0.7 0.78309
Target:  5'- aGCCGGaGC-AGCAGcccGUCGUUCGCGg- -3'
miRNA:   3'- -UGGCCaUGuUCGUC---UAGCGAGCGCgc -5'
10974 3' -56 NC_002794.1 + 186291 0.66 0.928714
Target:  5'- cACCGcGgcCAGGCGGccgGUCGCcgcggCGCGCu -3'
miRNA:   3'- -UGGC-CauGUUCGUC---UAGCGa----GCGCGc -5'
10974 3' -56 NC_002794.1 + 183592 0.68 0.865883
Target:  5'- -aCGGUGgGGGCGGAgggggGCcgCGCGCGg -3'
miRNA:   3'- ugGCCAUgUUCGUCUag---CGa-GCGCGC- -5'
10974 3' -56 NC_002794.1 + 183046 0.73 0.597021
Target:  5'- aGCaCGcGUAguAGCccAGGUCGCUCGCGCu -3'
miRNA:   3'- -UG-GC-CAUguUCG--UCUAGCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 182571 0.68 0.850744
Target:  5'- cACCGGgaucuccgUGCGGGCGacgauGGUCGCguugUCGCGCa -3'
miRNA:   3'- -UGGCC--------AUGUUCGU-----CUAGCG----AGCGCGc -5'
10974 3' -56 NC_002794.1 + 177721 0.67 0.917953
Target:  5'- -gCGGUcCAcggGGCGGAUCcgaccgaCUCGCGCGa -3'
miRNA:   3'- ugGCCAuGU---UCGUCUAGc------GAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 156002 0.66 0.927159
Target:  5'- cUCGG-ACGAGCgacgggggucucauGGGUCGCagccgucgcgUCGCGCGa -3'
miRNA:   3'- uGGCCaUGUUCG--------------UCUAGCG----------AGCGCGC- -5'
10974 3' -56 NC_002794.1 + 153033 0.67 0.917953
Target:  5'- gACgGGaACGAcGCGGGUCcCUCGgGCGg -3'
miRNA:   3'- -UGgCCaUGUU-CGUCUAGcGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 149657 0.67 0.917953
Target:  5'- cGCCGaGgaggcCGAGCGGGggCGCgUCGCGCu -3'
miRNA:   3'- -UGGC-Cau---GUUCGUCUa-GCG-AGCGCGc -5'
10974 3' -56 NC_002794.1 + 149278 0.66 0.947472
Target:  5'- cGCCGGcgGCGcGGCGGcUCGCUCaCGgGg -3'
miRNA:   3'- -UGGCCa-UGU-UCGUCuAGCGAGcGCgC- -5'
10974 3' -56 NC_002794.1 + 148144 0.66 0.949148
Target:  5'- cGCCGGgGCGAGgGcGGUCGCgacggaaggagggggUCGCGaCGg -3'
miRNA:   3'- -UGGCCaUGUUCgU-CUAGCG---------------AGCGC-GC- -5'
10974 3' -56 NC_002794.1 + 145316 0.69 0.826616
Target:  5'- aACCGGcGCGcGGCGGGcggCGCUCGgGCc -3'
miRNA:   3'- -UGGCCaUGU-UCGUCUa--GCGAGCgCGc -5'
10974 3' -56 NC_002794.1 + 144882 0.7 0.800951
Target:  5'- uCgGGUGCgGGGCgAGA-CGCUCGCGCc -3'
miRNA:   3'- uGgCCAUG-UUCG-UCUaGCGAGCGCGc -5'
10974 3' -56 NC_002794.1 + 143837 0.66 0.938552
Target:  5'- gGCCGGUccgacgccuccgGcCAGGC-GAUCGC-CGcCGCGg -3'
miRNA:   3'- -UGGCCA------------U-GUUCGuCUAGCGaGC-GCGC- -5'
10974 3' -56 NC_002794.1 + 143301 0.69 0.842088
Target:  5'- gGCgGGUGCAgcgcGGCGGGauggaagUCGgUCGCGUGc -3'
miRNA:   3'- -UGgCCAUGU----UCGUCU-------AGCgAGCGCGC- -5'
10974 3' -56 NC_002794.1 + 142399 0.67 0.917953
Target:  5'- -gCGGUGCAGGCGGcGUCgGCggcgccggGCGCGa -3'
miRNA:   3'- ugGCCAUGUUCGUC-UAG-CGag------CGCGC- -5'
10974 3' -56 NC_002794.1 + 141819 0.86 0.125376
Target:  5'- aGCCGGUuggacgacgACGAGCGGAUCGCUCG-GCGg -3'
miRNA:   3'- -UGGCCA---------UGUUCGUCUAGCGAGCgCGC- -5'
10974 3' -56 NC_002794.1 + 140798 0.71 0.726639
Target:  5'- uCCGuUACAcggucuauccGGUAGAUCGCUacCGCGCGg -3'
miRNA:   3'- uGGCcAUGU----------UCGUCUAGCGA--GCGCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.