miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 5' -58.8 NC_002794.1 + 83898 0.66 0.863482
Target:  5'- cGGCGCcCGAcgAGcCCggcacCCUCgCCGACAg -3'
miRNA:   3'- -UCGCGaGCU--UCuGGa----GGAGgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 150592 0.66 0.863482
Target:  5'- gGGCGCcCGAGGACggCCgggCgCCGGCu -3'
miRNA:   3'- -UCGCGaGCUUCUGgaGGa--GgGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 60183 0.66 0.85609
Target:  5'- gGGCGCUCGGccuGCCUCUUCagcgUCGACc -3'
miRNA:   3'- -UCGCGAGCUuc-UGGAGGAGg---GGCUGu -5'
10974 5' -58.8 NC_002794.1 + 62785 0.66 0.84851
Target:  5'- cGCGC-CGccuccGGGCCccuaCCUCUCCGGCAc -3'
miRNA:   3'- uCGCGaGCu----UCUGGa---GGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 75316 0.66 0.84851
Target:  5'- uGGCGacaccuagCGAcGACCUCUUCcCCCGAa- -3'
miRNA:   3'- -UCGCga------GCUuCUGGAGGAG-GGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 14907 0.66 0.84851
Target:  5'- cGCGCUCGAucgagcGGGCUcgCggUCCCGACGu -3'
miRNA:   3'- uCGCGAGCU------UCUGGa-GgaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 148291 0.66 0.840746
Target:  5'- gAGcCGCUCGAcGugCUguaCgaCCCCGACGg -3'
miRNA:   3'- -UC-GCGAGCUuCugGA---GgaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 106235 0.66 0.840746
Target:  5'- cGCGCUCGGgucgcAGACCgCCgcgaaCCGGCGa -3'
miRNA:   3'- uCGCGAGCU-----UCUGGaGGagg--GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 13354 0.66 0.840746
Target:  5'- cGGCGCcccUCGcccGGGcCCUCCUCCCCc--- -3'
miRNA:   3'- -UCGCG---AGC---UUCuGGAGGAGGGGcugu -5'
10974 5' -58.8 NC_002794.1 + 104744 0.66 0.832806
Target:  5'- gAGCGCUCGAucucgugguagcGGucgGCCcgCCggcgCUCCGACAc -3'
miRNA:   3'- -UCGCGAGCU------------UC---UGGa-GGa---GGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 15687 0.67 0.82796
Target:  5'- cGCGgUCGAAGACUaccggugccaguucaUCUUCaCCgGACAg -3'
miRNA:   3'- uCGCgAGCUUCUGG---------------AGGAG-GGgCUGU- -5'
10974 5' -58.8 NC_002794.1 + 32261 0.67 0.824697
Target:  5'- uGGCGCUCGAcGGCCggCCga-UCGGCGa -3'
miRNA:   3'- -UCGCGAGCUuCUGGa-GGaggGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 56363 0.67 0.824697
Target:  5'- aGGCGgUCGAcGugCUCgggaUCCaCCGGCAc -3'
miRNA:   3'- -UCGCgAGCUuCugGAGg---AGG-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 21486 0.67 0.824697
Target:  5'- cAGCgGCuUCGGAG-CCUCCgaccgUCUCCGGCu -3'
miRNA:   3'- -UCG-CG-AGCUUCuGGAGG-----AGGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 39616 0.67 0.807996
Target:  5'- cGCGCUCGAucaACCUCUUCaUCgGACu -3'
miRNA:   3'- uCGCGAGCUuc-UGGAGGAG-GGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 99263 0.67 0.807996
Target:  5'- aGGgGCUCGggGGCUccggcgCgCUCCCgGGCu -3'
miRNA:   3'- -UCgCGAGCuuCUGGa-----G-GAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 185137 0.67 0.807996
Target:  5'- cGGCGCcgcgUCGAgaAGAUCgccgacgcgUCCUCCgCCGGCGc -3'
miRNA:   3'- -UCGCG----AGCU--UCUGG---------AGGAGG-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 119235 0.67 0.799419
Target:  5'- aGGCGgUCGAGGAgCgUgUCCUCGGCGg -3'
miRNA:   3'- -UCGCgAGCUUCUgGaGgAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 63244 0.67 0.790701
Target:  5'- cGCGC-CGAacgGGACUUUCUCCggaCGACGg -3'
miRNA:   3'- uCGCGaGCU---UCUGGAGGAGGg--GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 91161 0.67 0.790701
Target:  5'- gGGCGCcgUGGAGGCCUucaagcucccCCUguaCCCGGCGa -3'
miRNA:   3'- -UCGCGa-GCUUCUGGA----------GGAg--GGGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.