miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 5' -58.8 NC_002794.1 + 15687 0.67 0.82796
Target:  5'- cGCGgUCGAAGACUaccggugccaguucaUCUUCaCCgGACAg -3'
miRNA:   3'- uCGCgAGCUUCUGG---------------AGGAG-GGgCUGU- -5'
10974 5' -58.8 NC_002794.1 + 32261 0.67 0.824697
Target:  5'- uGGCGCUCGAcGGCCggCCga-UCGGCGa -3'
miRNA:   3'- -UCGCGAGCUuCUGGa-GGaggGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 56363 0.67 0.824697
Target:  5'- aGGCGgUCGAcGugCUCgggaUCCaCCGGCAc -3'
miRNA:   3'- -UCGCgAGCUuCugGAGg---AGG-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 21486 0.67 0.824697
Target:  5'- cAGCgGCuUCGGAG-CCUCCgaccgUCUCCGGCu -3'
miRNA:   3'- -UCG-CG-AGCUUCuGGAGG-----AGGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 185137 0.67 0.807996
Target:  5'- cGGCGCcgcgUCGAgaAGAUCgccgacgcgUCCUCCgCCGGCGc -3'
miRNA:   3'- -UCGCG----AGCU--UCUGG---------AGGAGG-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 99263 0.67 0.807996
Target:  5'- aGGgGCUCGggGGCUccggcgCgCUCCCgGGCu -3'
miRNA:   3'- -UCgCGAGCuuCUGGa-----G-GAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 39616 0.67 0.807996
Target:  5'- cGCGCUCGAucaACCUCUUCaUCgGACu -3'
miRNA:   3'- uCGCGAGCUuc-UGGAGGAG-GGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 51944 0.68 0.735886
Target:  5'- cGCGUUCacguccaacaaGAAGGCCUCCgggaCCGGCAu -3'
miRNA:   3'- uCGCGAG-----------CUUCUGGAGGagg-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 80523 0.68 0.74528
Target:  5'- cGGCGCgCGAcgccuggcaccGGcGCCUCUUCCCCG-CGg -3'
miRNA:   3'- -UCGCGaGCU-----------UC-UGGAGGAGGGGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 73777 0.68 0.734941
Target:  5'- uGGCGCUCcAGGuCCUgcuguacCCgUCCCCGACc -3'
miRNA:   3'- -UCGCGAGcUUCuGGA-------GG-AGGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 179561 0.68 0.74528
Target:  5'- cAGCuGCUCGAAGACCgauuuggaggCCUUCuuGcGCAa -3'
miRNA:   3'- -UCG-CGAGCUUCUGGa---------GGAGGggC-UGU- -5'
10974 5' -58.8 NC_002794.1 + 135790 0.68 0.754581
Target:  5'- aAGUGCUCGAAcucGACCgUCUCCuCCGuCGc -3'
miRNA:   3'- -UCGCGAGCUU---CUGGaGGAGG-GGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 115767 0.69 0.701431
Target:  5'- cGGCGCUCGAAGgacucgaucGCCUCCguguaccucuggagCgUCGGCAg -3'
miRNA:   3'- -UCGCGAGCUUC---------UGGAGGa-------------GgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 119660 0.69 0.678047
Target:  5'- cAGCGUgaccucGACCUCCggcgUCCCCGGCGu -3'
miRNA:   3'- -UCGCGagcuu-CUGGAGG----AGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 35345 0.69 0.707233
Target:  5'- cGCGgUCGAGGcCCUgC-CCCUGACGc -3'
miRNA:   3'- uCGCgAGCUUCuGGAgGaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 30947 0.69 0.711089
Target:  5'- cGCGCcgCGAgacAGGCaCgggaugucgugacggUCCUCCCCGGCGa -3'
miRNA:   3'- uCGCGa-GCU---UCUG-G---------------AGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 136737 0.69 0.707233
Target:  5'- aGGCGgUCGAGGuuCgUCUCCCCGAg- -3'
miRNA:   3'- -UCGCgAGCUUCugGaGGAGGGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 152935 0.69 0.716854
Target:  5'- gGGCGUaCaucGACCUCCUCUCCgGACAc -3'
miRNA:   3'- -UCGCGaGcuuCUGGAGGAGGGG-CUGU- -5'
10974 5' -58.8 NC_002794.1 + 188372 0.69 0.716854
Target:  5'- cGGCgGC-CGAGGGCgUUCUCCCgGGCu -3'
miRNA:   3'- -UCG-CGaGCUUCUGgAGGAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 74514 0.7 0.658402
Target:  5'- cGCaGCUC----GCCUgCCUCCCCGACGa -3'
miRNA:   3'- uCG-CGAGcuucUGGA-GGAGGGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.