miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 5' -58.8 NC_002794.1 + 48939 0.77 0.287324
Target:  5'- aGGCGCUCGgcGACCUCUUCgCagaCGGCGa -3'
miRNA:   3'- -UCGCGAGCuuCUGGAGGAG-Gg--GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 38572 0.76 0.320458
Target:  5'- cGGCGcCUCGAcggagucGGccGCCUCCUCCCgGACGa -3'
miRNA:   3'- -UCGC-GAGCU-------UC--UGGAGGAGGGgCUGU- -5'
10974 5' -58.8 NC_002794.1 + 50783 0.76 0.328279
Target:  5'- cGCGuCUCGGgcGGcGCCUCCUCgCCCGGCGu -3'
miRNA:   3'- uCGC-GAGCU--UC-UGGAGGAG-GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 41375 0.74 0.413237
Target:  5'- cGCGCUCGcGGcGCCUCCUucggcggCCCCGAUu -3'
miRNA:   3'- uCGCGAGCuUC-UGGAGGA-------GGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 18888 0.73 0.457375
Target:  5'- cGGCGCggagCGuc-ACC-CCUCCCCGACGg -3'
miRNA:   3'- -UCGCGa---GCuucUGGaGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 191814 0.72 0.531281
Target:  5'- cGGcCGCUCGAGGACCgcgagCUCgCUCGACGg -3'
miRNA:   3'- -UC-GCGAGCUUCUGGag---GAG-GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 8118 0.72 0.531281
Target:  5'- gAGCGggCGgcGGCCUCCUCggugaCCGGCGa -3'
miRNA:   3'- -UCGCgaGCuuCUGGAGGAGg----GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 31361 0.72 0.540844
Target:  5'- -cCGCucgUCGAAGucguCCUCCUCCCCGuCGu -3'
miRNA:   3'- ucGCG---AGCUUCu---GGAGGAGGGGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 21942 0.71 0.560135
Target:  5'- cGGCGCucgUCGAAGGCCgucggCCgcUCCCgCGGCGc -3'
miRNA:   3'- -UCGCG---AGCUUCUGGa----GG--AGGG-GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 71124 0.71 0.580589
Target:  5'- aGGCGCUCGuucaucuccgucagcGGGCUgugCCgCCCCGGCAa -3'
miRNA:   3'- -UCGCGAGCu--------------UCUGGa--GGaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 84189 0.7 0.609073
Target:  5'- cGGCGCUCGGcccGCCUCCcaccaCCCCGGg- -3'
miRNA:   3'- -UCGCGAGCUuc-UGGAGGa----GGGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 73899 0.7 0.628805
Target:  5'- uGcCGUUCGAAGACUUCCUCgagCGACAc -3'
miRNA:   3'- uC-GCGAGCUUCUGGAGGAGgg-GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 95262 0.7 0.628805
Target:  5'- gAGCcuGCUCGAgcucuugaagGGGCuCUCCUCUUCGGCGg -3'
miRNA:   3'- -UCG--CGAGCU----------UCUG-GAGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 56224 0.7 0.638678
Target:  5'- gAGCaGCUCGuuGGCCUCCcacUCCUCG-CAg -3'
miRNA:   3'- -UCG-CGAGCuuCUGGAGG---AGGGGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 74514 0.7 0.658402
Target:  5'- cGCaGCUC----GCCUgCCUCCCCGACGa -3'
miRNA:   3'- uCG-CGAGcuucUGGA-GGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 810 0.7 0.658402
Target:  5'- gGGCGgUCGGgaggGGGCCUUUuccuccggUCCCCGGCGc -3'
miRNA:   3'- -UCGCgAGCU----UCUGGAGG--------AGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 119660 0.69 0.678047
Target:  5'- cAGCGUgaccucGACCUCCggcgUCCCCGGCGu -3'
miRNA:   3'- -UCGCGagcuu-CUGGAGG----AGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 115767 0.69 0.701431
Target:  5'- cGGCGCUCGAAGgacucgaucGCCUCCguguaccucuggagCgUCGGCAg -3'
miRNA:   3'- -UCGCGAGCUUC---------UGGAGGa-------------GgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 136737 0.69 0.707233
Target:  5'- aGGCGgUCGAGGuuCgUCUCCCCGAg- -3'
miRNA:   3'- -UCGCgAGCUUCugGaGGAGGGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 35345 0.69 0.707233
Target:  5'- cGCGgUCGAGGcCCUgC-CCCUGACGc -3'
miRNA:   3'- uCGCgAGCUUCuGGAgGaGGGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.