miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 5' -58.8 NC_002794.1 + 63244 0.67 0.790701
Target:  5'- cGCGC-CGAacgGGACUUUCUCCggaCGACGg -3'
miRNA:   3'- uCGCGaGCU---UCUGGAGGAGGg--GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 102520 0.67 0.790701
Target:  5'- cGCGCgcgCGGGacGACCUCUUCUCgGGCc -3'
miRNA:   3'- uCGCGa--GCUU--CUGGAGGAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 32938 0.67 0.789822
Target:  5'- aAGCGCUCGGcggccagGGACUUgaCCUUgUCGACGa -3'
miRNA:   3'- -UCGCGAGCU-------UCUGGA--GGAGgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 74408 0.67 0.781851
Target:  5'- gAGCGcCUCGAcGAgCUCUUCggCCUGACGa -3'
miRNA:   3'- -UCGC-GAGCUuCUgGAGGAG--GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 102181 0.67 0.781851
Target:  5'- uGGCGCgcggCGAGGACCUggcggCCgCCgUGACGg -3'
miRNA:   3'- -UCGCGa---GCUUCUGGA-----GGaGGgGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 46416 0.67 0.780959
Target:  5'- aAGCGCgccCGAAcguGAUCUCgacggaaUUCCCCGACGc -3'
miRNA:   3'- -UCGCGa--GCUU---CUGGAG-------GAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 13717 0.67 0.780959
Target:  5'- gGGCGCUCGAccgugcGGACCcacacgcUCCcggCCggCCGACAc -3'
miRNA:   3'- -UCGCGAGCU------UCUGG-------AGGa--GG--GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 135790 0.68 0.754581
Target:  5'- aAGUGCUCGAAcucGACCgUCUCCuCCGuCGc -3'
miRNA:   3'- -UCGCGAGCUU---CUGGaGGAGG-GGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 80523 0.68 0.74528
Target:  5'- cGGCGCgCGAcgccuggcaccGGcGCCUCUUCCCCG-CGg -3'
miRNA:   3'- -UCGCGaGCU-----------UC-UGGAGGAGGGGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 179561 0.68 0.74528
Target:  5'- cAGCuGCUCGAAGACCgauuuggaggCCUUCuuGcGCAa -3'
miRNA:   3'- -UCG-CGAGCUUCUGGa---------GGAGGggC-UGU- -5'
10974 5' -58.8 NC_002794.1 + 51944 0.68 0.735886
Target:  5'- cGCGUUCacguccaacaaGAAGGCCUCCgggaCCGGCAu -3'
miRNA:   3'- uCGCGAG-----------CUUCUGGAGGagg-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 73777 0.68 0.734941
Target:  5'- uGGCGCUCcAGGuCCUgcuguacCCgUCCCCGACc -3'
miRNA:   3'- -UCGCGAGcUUCuGGA-------GG-AGGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 188372 0.69 0.716854
Target:  5'- cGGCgGC-CGAGGGCgUUCUCCCgGGCu -3'
miRNA:   3'- -UCG-CGaGCUUCUGgAGGAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 152935 0.69 0.716854
Target:  5'- gGGCGUaCaucGACCUCCUCUCCgGACAc -3'
miRNA:   3'- -UCGCGaGcuuCUGGAGGAGGGG-CUGU- -5'
10974 5' -58.8 NC_002794.1 + 30947 0.69 0.711089
Target:  5'- cGCGCcgCGAgacAGGCaCgggaugucgugacggUCCUCCCCGGCGa -3'
miRNA:   3'- uCGCGa-GCU---UCUG-G---------------AGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 136737 0.69 0.707233
Target:  5'- aGGCGgUCGAGGuuCgUCUCCCCGAg- -3'
miRNA:   3'- -UCGCgAGCUUCugGaGGAGGGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 35345 0.69 0.707233
Target:  5'- cGCGgUCGAGGcCCUgC-CCCUGACGc -3'
miRNA:   3'- uCGCgAGCUUCuGGAgGaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 115767 0.69 0.701431
Target:  5'- cGGCGCUCGAAGgacucgaucGCCUCCguguaccucuggagCgUCGGCAg -3'
miRNA:   3'- -UCGCGAGCUUC---------UGGAGGa-------------GgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 119660 0.69 0.678047
Target:  5'- cAGCGUgaccucGACCUCCggcgUCCCCGGCGu -3'
miRNA:   3'- -UCGCGagcuu-CUGGAGG----AGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 74514 0.7 0.658402
Target:  5'- cGCaGCUC----GCCUgCCUCCCCGACGa -3'
miRNA:   3'- uCG-CGAGcuucUGGA-GGAGGGGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.