miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 5' -58.8 NC_002794.1 + 810 0.7 0.658402
Target:  5'- gGGCGgUCGGgaggGGGCCUUUuccuccggUCCCCGGCGc -3'
miRNA:   3'- -UCGCgAGCU----UCUGGAGG--------AGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 8118 0.72 0.531281
Target:  5'- gAGCGggCGgcGGCCUCCUCggugaCCGGCGa -3'
miRNA:   3'- -UCGCgaGCuuCUGGAGGAGg----GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 13354 0.66 0.840746
Target:  5'- cGGCGCcccUCGcccGGGcCCUCCUCCCCc--- -3'
miRNA:   3'- -UCGCG---AGC---UUCuGGAGGAGGGGcugu -5'
10974 5' -58.8 NC_002794.1 + 13717 0.67 0.780959
Target:  5'- gGGCGCUCGAccgugcGGACCcacacgcUCCcggCCggCCGACAc -3'
miRNA:   3'- -UCGCGAGCU------UCUGG-------AGGa--GG--GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 14907 0.66 0.84851
Target:  5'- cGCGCUCGAucgagcGGGCUcgCggUCCCGACGu -3'
miRNA:   3'- uCGCGAGCU------UCUGGa-GgaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 15687 0.67 0.82796
Target:  5'- cGCGgUCGAAGACUaccggugccaguucaUCUUCaCCgGACAg -3'
miRNA:   3'- uCGCgAGCUUCUGG---------------AGGAG-GGgCUGU- -5'
10974 5' -58.8 NC_002794.1 + 18888 0.73 0.457375
Target:  5'- cGGCGCggagCGuc-ACC-CCUCCCCGACGg -3'
miRNA:   3'- -UCGCGa---GCuucUGGaGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 21486 0.67 0.824697
Target:  5'- cAGCgGCuUCGGAG-CCUCCgaccgUCUCCGGCu -3'
miRNA:   3'- -UCG-CG-AGCUUCuGGAGG-----AGGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 21942 0.71 0.560135
Target:  5'- cGGCGCucgUCGAAGGCCgucggCCgcUCCCgCGGCGc -3'
miRNA:   3'- -UCGCG---AGCUUCUGGa----GG--AGGG-GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 30947 0.69 0.711089
Target:  5'- cGCGCcgCGAgacAGGCaCgggaugucgugacggUCCUCCCCGGCGa -3'
miRNA:   3'- uCGCGa-GCU---UCUG-G---------------AGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 31361 0.72 0.540844
Target:  5'- -cCGCucgUCGAAGucguCCUCCUCCCCGuCGu -3'
miRNA:   3'- ucGCG---AGCUUCu---GGAGGAGGGGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 32261 0.67 0.824697
Target:  5'- uGGCGCUCGAcGGCCggCCga-UCGGCGa -3'
miRNA:   3'- -UCGCGAGCUuCUGGa-GGaggGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 32938 0.67 0.789822
Target:  5'- aAGCGCUCGGcggccagGGACUUgaCCUUgUCGACGa -3'
miRNA:   3'- -UCGCGAGCU-------UCUGGA--GGAGgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 33505 0.67 0.790701
Target:  5'- aAGCuGCUgGAcccGGGCCagagCCUCUCCGGCc -3'
miRNA:   3'- -UCG-CGAgCU---UCUGGa---GGAGGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 35345 0.69 0.707233
Target:  5'- cGCGgUCGAGGcCCUgC-CCCUGACGc -3'
miRNA:   3'- uCGCgAGCUUCuGGAgGaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 38572 0.76 0.320458
Target:  5'- cGGCGcCUCGAcggagucGGccGCCUCCUCCCgGACGa -3'
miRNA:   3'- -UCGC-GAGCU-------UC--UGGAGGAGGGgCUGU- -5'
10974 5' -58.8 NC_002794.1 + 39616 0.67 0.807996
Target:  5'- cGCGCUCGAucaACCUCUUCaUCgGACu -3'
miRNA:   3'- uCGCGAGCUuc-UGGAGGAG-GGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 41375 0.74 0.413237
Target:  5'- cGCGCUCGcGGcGCCUCCUucggcggCCCCGAUu -3'
miRNA:   3'- uCGCGAGCuUC-UGGAGGA-------GGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 46416 0.67 0.780959
Target:  5'- aAGCGCgccCGAAcguGAUCUCgacggaaUUCCCCGACGc -3'
miRNA:   3'- -UCGCGa--GCUU---CUGGAG-------GAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 48939 0.77 0.287324
Target:  5'- aGGCGCUCGgcGACCUCUUCgCagaCGGCGa -3'
miRNA:   3'- -UCGCGAGCuuCUGGAGGAG-Gg--GCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.