miRNA display CGI


Results 21 - 40 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 5' -58.8 NC_002794.1 + 50783 0.76 0.328279
Target:  5'- cGCGuCUCGGgcGGcGCCUCCUCgCCCGGCGu -3'
miRNA:   3'- uCGC-GAGCU--UC-UGGAGGAG-GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 51944 0.68 0.735886
Target:  5'- cGCGUUCacguccaacaaGAAGGCCUCCgggaCCGGCAu -3'
miRNA:   3'- uCGCGAG-----------CUUCUGGAGGagg-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 56224 0.7 0.638678
Target:  5'- gAGCaGCUCGuuGGCCUCCcacUCCUCG-CAg -3'
miRNA:   3'- -UCG-CGAGCuuCUGGAGG---AGGGGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 56363 0.67 0.824697
Target:  5'- aGGCGgUCGAcGugCUCgggaUCCaCCGGCAc -3'
miRNA:   3'- -UCGCgAGCUuCugGAGg---AGG-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 60183 0.66 0.85609
Target:  5'- gGGCGCUCGGccuGCCUCUUCagcgUCGACc -3'
miRNA:   3'- -UCGCGAGCUuc-UGGAGGAGg---GGCUGu -5'
10974 5' -58.8 NC_002794.1 + 62785 0.66 0.84851
Target:  5'- cGCGC-CGccuccGGGCCccuaCCUCUCCGGCAc -3'
miRNA:   3'- uCGCGaGCu----UCUGGa---GGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 63244 0.67 0.790701
Target:  5'- cGCGC-CGAacgGGACUUUCUCCggaCGACGg -3'
miRNA:   3'- uCGCGaGCU---UCUGGAGGAGGg--GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 71124 0.71 0.580589
Target:  5'- aGGCGCUCGuucaucuccgucagcGGGCUgugCCgCCCCGGCAa -3'
miRNA:   3'- -UCGCGAGCu--------------UCUGGa--GGaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 73777 0.68 0.734941
Target:  5'- uGGCGCUCcAGGuCCUgcuguacCCgUCCCCGACc -3'
miRNA:   3'- -UCGCGAGcUUCuGGA-------GG-AGGGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 73899 0.7 0.628805
Target:  5'- uGcCGUUCGAAGACUUCCUCgagCGACAc -3'
miRNA:   3'- uC-GCGAGCUUCUGGAGGAGgg-GCUGU- -5'
10974 5' -58.8 NC_002794.1 + 74408 0.67 0.781851
Target:  5'- gAGCGcCUCGAcGAgCUCUUCggCCUGACGa -3'
miRNA:   3'- -UCGC-GAGCUuCUgGAGGAG--GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 74514 0.7 0.658402
Target:  5'- cGCaGCUC----GCCUgCCUCCCCGACGa -3'
miRNA:   3'- uCG-CGAGcuucUGGA-GGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 75316 0.66 0.84851
Target:  5'- uGGCGacaccuagCGAcGACCUCUUCcCCCGAa- -3'
miRNA:   3'- -UCGCga------GCUuCUGGAGGAG-GGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 80523 0.68 0.74528
Target:  5'- cGGCGCgCGAcgccuggcaccGGcGCCUCUUCCCCG-CGg -3'
miRNA:   3'- -UCGCGaGCU-----------UC-UGGAGGAGGGGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 83898 0.66 0.863482
Target:  5'- cGGCGCcCGAcgAGcCCggcacCCUCgCCGACAg -3'
miRNA:   3'- -UCGCGaGCU--UCuGGa----GGAGgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 84189 0.7 0.609073
Target:  5'- cGGCGCUCGGcccGCCUCCcaccaCCCCGGg- -3'
miRNA:   3'- -UCGCGAGCUuc-UGGAGGa----GGGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 91161 0.67 0.790701
Target:  5'- gGGCGCcgUGGAGGCCUucaagcucccCCUguaCCCGGCGa -3'
miRNA:   3'- -UCGCGa-GCUUCUGGA----------GGAg--GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 95262 0.7 0.628805
Target:  5'- gAGCcuGCUCGAgcucuugaagGGGCuCUCCUCUUCGGCGg -3'
miRNA:   3'- -UCG--CGAGCU----------UCUG-GAGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 99263 0.67 0.807996
Target:  5'- aGGgGCUCGggGGCUccggcgCgCUCCCgGGCu -3'
miRNA:   3'- -UCgCGAGCuuCUGGa-----G-GAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 102181 0.67 0.781851
Target:  5'- uGGCGCgcggCGAGGACCUggcggCCgCCgUGACGg -3'
miRNA:   3'- -UCGCGa---GCUUCUGGA-----GGaGGgGCUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.