miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10974 5' -58.8 NC_002794.1 + 191814 0.72 0.531281
Target:  5'- cGGcCGCUCGAGGACCgcgagCUCgCUCGACGg -3'
miRNA:   3'- -UC-GCGAGCUUCUGGag---GAG-GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 188372 0.69 0.716854
Target:  5'- cGGCgGC-CGAGGGCgUUCUCCCgGGCu -3'
miRNA:   3'- -UCG-CGaGCUUCUGgAGGAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 185137 0.67 0.807996
Target:  5'- cGGCGCcgcgUCGAgaAGAUCgccgacgcgUCCUCCgCCGGCGc -3'
miRNA:   3'- -UCGCG----AGCU--UCUGG---------AGGAGG-GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 179561 0.68 0.74528
Target:  5'- cAGCuGCUCGAAGACCgauuuggaggCCUUCuuGcGCAa -3'
miRNA:   3'- -UCG-CGAGCUUCUGGa---------GGAGGggC-UGU- -5'
10974 5' -58.8 NC_002794.1 + 152935 0.69 0.716854
Target:  5'- gGGCGUaCaucGACCUCCUCUCCgGACAc -3'
miRNA:   3'- -UCGCGaGcuuCUGGAGGAGGGG-CUGU- -5'
10974 5' -58.8 NC_002794.1 + 150592 0.66 0.863482
Target:  5'- gGGCGCcCGAGGACggCCgggCgCCGGCu -3'
miRNA:   3'- -UCGCGaGCUUCUGgaGGa--GgGGCUGu -5'
10974 5' -58.8 NC_002794.1 + 148291 0.66 0.840746
Target:  5'- gAGcCGCUCGAcGugCUguaCgaCCCCGACGg -3'
miRNA:   3'- -UC-GCGAGCUuCugGA---GgaGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 136737 0.69 0.707233
Target:  5'- aGGCGgUCGAGGuuCgUCUCCCCGAg- -3'
miRNA:   3'- -UCGCgAGCUUCugGaGGAGGGGCUgu -5'
10974 5' -58.8 NC_002794.1 + 135790 0.68 0.754581
Target:  5'- aAGUGCUCGAAcucGACCgUCUCCuCCGuCGc -3'
miRNA:   3'- -UCGCGAGCUU---CUGGaGGAGG-GGCuGU- -5'
10974 5' -58.8 NC_002794.1 + 119660 0.69 0.678047
Target:  5'- cAGCGUgaccucGACCUCCggcgUCCCCGGCGu -3'
miRNA:   3'- -UCGCGagcuu-CUGGAGG----AGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 119235 0.67 0.799419
Target:  5'- aGGCGgUCGAGGAgCgUgUCCUCGGCGg -3'
miRNA:   3'- -UCGCgAGCUUCUgGaGgAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 115767 0.69 0.701431
Target:  5'- cGGCGCUCGAAGgacucgaucGCCUCCguguaccucuggagCgUCGGCAg -3'
miRNA:   3'- -UCGCGAGCUUC---------UGGAGGa-------------GgGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 106235 0.66 0.840746
Target:  5'- cGCGCUCGGgucgcAGACCgCCgcgaaCCGGCGa -3'
miRNA:   3'- uCGCGAGCU-----UCUGGaGGagg--GGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 104744 0.66 0.832806
Target:  5'- gAGCGCUCGAucucgugguagcGGucgGCCcgCCggcgCUCCGACAc -3'
miRNA:   3'- -UCGCGAGCU------------UC---UGGa-GGa---GGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 102520 0.67 0.790701
Target:  5'- cGCGCgcgCGGGacGACCUCUUCUCgGGCc -3'
miRNA:   3'- uCGCGa--GCUU--CUGGAGGAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 102181 0.67 0.781851
Target:  5'- uGGCGCgcggCGAGGACCUggcggCCgCCgUGACGg -3'
miRNA:   3'- -UCGCGa---GCUUCUGGA-----GGaGGgGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 99263 0.67 0.807996
Target:  5'- aGGgGCUCGggGGCUccggcgCgCUCCCgGGCu -3'
miRNA:   3'- -UCgCGAGCuuCUGGa-----G-GAGGGgCUGu -5'
10974 5' -58.8 NC_002794.1 + 95262 0.7 0.628805
Target:  5'- gAGCcuGCUCGAgcucuugaagGGGCuCUCCUCUUCGGCGg -3'
miRNA:   3'- -UCG--CGAGCU----------UCUG-GAGGAGGGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 91161 0.67 0.790701
Target:  5'- gGGCGCcgUGGAGGCCUucaagcucccCCUguaCCCGGCGa -3'
miRNA:   3'- -UCGCGa-GCUUCUGGA----------GGAg--GGGCUGU- -5'
10974 5' -58.8 NC_002794.1 + 84189 0.7 0.609073
Target:  5'- cGGCGCUCGGcccGCCUCCcaccaCCCCGGg- -3'
miRNA:   3'- -UCGCGAGCUuc-UGGAGGa----GGGGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.