Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10975 | 5' | -57.8 | NC_002794.1 | + | 67049 | 0.66 | 0.904536 |
Target: 5'- cGGACCcgGcGUCCgUGGGCUCCUcgcuggCCu -3' miRNA: 3'- aCUUGGa-C-UAGGgGCCCGAGGAca----GG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 128919 | 0.66 | 0.903931 |
Target: 5'- cGGACCUGGUCgCCGacgacgaacguccGGUggagCCUGcgCCg -3' miRNA: 3'- aCUUGGACUAGgGGC-------------CCGa---GGACa-GG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 44617 | 0.66 | 0.892022 |
Target: 5'- gGGGCacguUCUCaaCGGGCUCCgUGUCCg -3' miRNA: 3'- aCUUGgacuAGGG--GCCCGAGG-ACAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 136201 | 0.66 | 0.892022 |
Target: 5'- aUGAACCcGAgaaccUCCCGGGCcagCCgacgauacgUGUCCc -3' miRNA: 3'- -ACUUGGaCUa----GGGGCCCGa--GG---------ACAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 155503 | 0.66 | 0.892022 |
Target: 5'- aGAGCC-GAaa-CCGGGCcgCCUGuUCCa -3' miRNA: 3'- aCUUGGaCUaggGGCCCGa-GGAC-AGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 52009 | 0.66 | 0.891374 |
Target: 5'- aGuACCUGAUCUaCGGGCUCgaGcacuacuUCCu -3' miRNA: 3'- aCuUGGACUAGGgGCCCGAGgaC-------AGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 115854 | 0.66 | 0.889416 |
Target: 5'- cGGGCCUGGgacgcgcgaggggUCCgGGGCgUCCggggcGUCCg -3' miRNA: 3'- aCUUGGACUa------------GGGgCCCG-AGGa----CAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 90575 | 0.66 | 0.885443 |
Target: 5'- -cGGCg-GGUCCCgGGcGCUCCaGUCCc -3' miRNA: 3'- acUUGgaCUAGGGgCC-CGAGGaCAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 101001 | 0.67 | 0.864462 |
Target: 5'- aGAGCUg---CCgCGGGCcuUCCUGUCg -3' miRNA: 3'- aCUUGGacuaGGgGCCCG--AGGACAGg -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 138728 | 0.67 | 0.85707 |
Target: 5'- cGAGCCggcucgacggGGUCCCCGGccCUCCgGgggCCg -3' miRNA: 3'- aCUUGGa---------CUAGGGGCCc-GAGGaCa--GG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 186199 | 0.67 | 0.85707 |
Target: 5'- uUGAACCgcgGG-CCCCaGGGCagauggcggUCCggGUCCc -3' miRNA: 3'- -ACUUGGa--CUaGGGG-CCCG---------AGGa-CAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 13025 | 0.67 | 0.849487 |
Target: 5'- cGcGCCUGuUCCUCGGGUaCCggcGUCUg -3' miRNA: 3'- aCuUGGACuAGGGGCCCGaGGa--CAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 35816 | 0.68 | 0.808931 |
Target: 5'- cGGACCcGGUUUCCGGGCcgCCg--CCa -3' miRNA: 3'- aCUUGGaCUAGGGGCCCGa-GGacaGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 12264 | 0.68 | 0.808931 |
Target: 5'- gGAACgaGAcgUCUCCGGGUUUCcgcgccugggUGUCCg -3' miRNA: 3'- aCUUGgaCU--AGGGGCCCGAGG----------ACAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 40133 | 0.68 | 0.808931 |
Target: 5'- aGAGCCacgGGcUCUCCGcGGCUUCUgcgcGUCCa -3' miRNA: 3'- aCUUGGa--CU-AGGGGC-CCGAGGA----CAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 186032 | 0.68 | 0.80034 |
Target: 5'- cGGACCcGggCCCCGGcuggccgucGUUCCccgGUCCg -3' miRNA: 3'- aCUUGGaCuaGGGGCC---------CGAGGa--CAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 182676 | 0.68 | 0.80034 |
Target: 5'- aGGACCcGGUCCCCGGagcGCUUCgcuugcGUCa -3' miRNA: 3'- aCUUGGaCUAGGGGCC---CGAGGa-----CAGg -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 35032 | 0.68 | 0.80034 |
Target: 5'- ---uCCUGAUCCgCGGGCUgauggagGUCCa -3' miRNA: 3'- acuuGGACUAGGgGCCCGAgga----CAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 41305 | 0.68 | 0.782738 |
Target: 5'- cGGGCCgcguggGGUCUCCGaGGuCUCCgagGUCUc -3' miRNA: 3'- aCUUGGa-----CUAGGGGC-CC-GAGGa--CAGG- -5' |
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10975 | 5' | -57.8 | NC_002794.1 | + | 123497 | 0.7 | 0.688453 |
Target: 5'- gUGGACCUGugcAUCgCCGGGCUgCCgg-CCu -3' miRNA: 3'- -ACUUGGAC---UAGgGGCCCGA-GGacaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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