Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 128919 | 0.66 | 0.903931 |
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Target: 5'- cGGACCUGGUCgCCGacgacgaacguccGGUggagCCUGcgCCg -3' miRNA: 3'- aCUUGGACUAGgGGC-------------CCGa---GGACa-GG- -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 135974 | 0.73 | 0.502034 |
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Target: 5'- cGAGCCcGG-CgCCGGGCUCCucuucgcUGUCCg -3' miRNA: 3'- aCUUGGaCUaGgGGCCCGAGG-------ACAGG- -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 136201 | 0.66 | 0.892022 |
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Target: 5'- aUGAACCcGAgaaccUCCCGGGCcagCCgacgauacgUGUCCc -3' miRNA: 3'- -ACUUGGaCUa----GGGGCCCGa--GG---------ACAGG- -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 138728 | 0.67 | 0.85707 |
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Target: 5'- cGAGCCggcucgacggGGUCCCCGGccCUCCgGgggCCg -3' miRNA: 3'- aCUUGGa---------CUAGGGGCCc-GAGGaCa--GG- -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 152415 | 0.74 | 0.448321 |
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Target: 5'- -cGACCUGcugCCCCGGGCcgUCUGUCg -3' miRNA: 3'- acUUGGACua-GGGGCCCGa-GGACAGg -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 155503 | 0.66 | 0.892022 |
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Target: 5'- aGAGCC-GAaa-CCGGGCcgCCUGuUCCa -3' miRNA: 3'- aCUUGGaCUaggGGCCCGa-GGAC-AGG- -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 182676 | 0.68 | 0.80034 |
|
Target: 5'- aGGACCcGGUCCCCGGagcGCUUCgcuugcGUCa -3' miRNA: 3'- aCUUGGaCUAGGGGCC---CGAGGa-----CAGg -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 186032 | 0.68 | 0.80034 |
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Target: 5'- cGGACCcGggCCCCGGcuggccgucGUUCCccgGUCCg -3' miRNA: 3'- aCUUGGaCuaGGGGCC---------CGAGGa--CAGG- -5' |
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| 10975 | 5' | -57.8 | NC_002794.1 | + | 186199 | 0.67 | 0.85707 |
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Target: 5'- uUGAACCgcgGG-CCCCaGGGCagauggcggUCCggGUCCc -3' miRNA: 3'- -ACUUGGa--CUaGGGG-CCCG---------AGGa-CAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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