miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10975 5' -57.8 NC_002794.1 + 186199 0.67 0.85707
Target:  5'- uUGAACCgcgGG-CCCCaGGGCagauggcggUCCggGUCCc -3'
miRNA:   3'- -ACUUGGa--CUaGGGG-CCCG---------AGGa-CAGG- -5'
10975 5' -57.8 NC_002794.1 + 186032 0.68 0.80034
Target:  5'- cGGACCcGggCCCCGGcuggccgucGUUCCccgGUCCg -3'
miRNA:   3'- aCUUGGaCuaGGGGCC---------CGAGGa--CAGG- -5'
10975 5' -57.8 NC_002794.1 + 182676 0.68 0.80034
Target:  5'- aGGACCcGGUCCCCGGagcGCUUCgcuugcGUCa -3'
miRNA:   3'- aCUUGGaCUAGGGGCC---CGAGGa-----CAGg -5'
10975 5' -57.8 NC_002794.1 + 155503 0.66 0.892022
Target:  5'- aGAGCC-GAaa-CCGGGCcgCCUGuUCCa -3'
miRNA:   3'- aCUUGGaCUaggGGCCCGa-GGAC-AGG- -5'
10975 5' -57.8 NC_002794.1 + 152415 0.74 0.448321
Target:  5'- -cGACCUGcugCCCCGGGCcgUCUGUCg -3'
miRNA:   3'- acUUGGACua-GGGGCCCGa-GGACAGg -5'
10975 5' -57.8 NC_002794.1 + 138728 0.67 0.85707
Target:  5'- cGAGCCggcucgacggGGUCCCCGGccCUCCgGgggCCg -3'
miRNA:   3'- aCUUGGa---------CUAGGGGCCc-GAGGaCa--GG- -5'
10975 5' -57.8 NC_002794.1 + 136201 0.66 0.892022
Target:  5'- aUGAACCcGAgaaccUCCCGGGCcagCCgacgauacgUGUCCc -3'
miRNA:   3'- -ACUUGGaCUa----GGGGCCCGa--GG---------ACAGG- -5'
10975 5' -57.8 NC_002794.1 + 135974 0.73 0.502034
Target:  5'- cGAGCCcGG-CgCCGGGCUCCucuucgcUGUCCg -3'
miRNA:   3'- aCUUGGaCUaGgGGCCCGAGG-------ACAGG- -5'
10975 5' -57.8 NC_002794.1 + 128919 0.66 0.903931
Target:  5'- cGGACCUGGUCgCCGacgacgaacguccGGUggagCCUGcgCCg -3'
miRNA:   3'- aCUUGGACUAGgGGC-------------CCGa---GGACa-GG- -5'
10975 5' -57.8 NC_002794.1 + 125800 0.74 0.48441
Target:  5'- cUGGuACCUGAcgcUCgCCGGGCUCUgcGUCCu -3'
miRNA:   3'- -ACU-UGGACU---AGgGGCCCGAGGa-CAGG- -5'
10975 5' -57.8 NC_002794.1 + 123926 0.7 0.678648
Target:  5'- cGGACCUGc-CCCCGGGCaCCgcguaccGUCUg -3'
miRNA:   3'- aCUUGGACuaGGGGCCCGaGGa------CAGG- -5'
10975 5' -57.8 NC_002794.1 + 123497 0.7 0.688453
Target:  5'- gUGGACCUGugcAUCgCCGGGCUgCCgg-CCu -3'
miRNA:   3'- -ACUUGGAC---UAGgGGCCCGA-GGacaGG- -5'
10975 5' -57.8 NC_002794.1 + 115854 0.66 0.889416
Target:  5'- cGGGCCUGGgacgcgcgaggggUCCgGGGCgUCCggggcGUCCg -3'
miRNA:   3'- aCUUGGACUa------------GGGgCCCG-AGGa----CAGG- -5'
10975 5' -57.8 NC_002794.1 + 101001 0.67 0.864462
Target:  5'- aGAGCUg---CCgCGGGCcuUCCUGUCg -3'
miRNA:   3'- aCUUGGacuaGGgGCCCG--AGGACAGg -5'
10975 5' -57.8 NC_002794.1 + 99888 0.7 0.678648
Target:  5'- aGGAgCUGAUCcaCCCGGGCUaCCg--CCa -3'
miRNA:   3'- aCUUgGACUAG--GGGCCCGA-GGacaGG- -5'
10975 5' -57.8 NC_002794.1 + 93076 0.7 0.668806
Target:  5'- cGAgcGCCUG-UUCCCGGGCugcggccucUCCUG-CCu -3'
miRNA:   3'- aCU--UGGACuAGGGGCCCG---------AGGACaGG- -5'
10975 5' -57.8 NC_002794.1 + 90575 0.66 0.885443
Target:  5'- -cGGCg-GGUCCCgGGcGCUCCaGUCCc -3'
miRNA:   3'- acUUGgaCUAGGGgCC-CGAGGaCAGG- -5'
10975 5' -57.8 NC_002794.1 + 73999 0.71 0.609436
Target:  5'- -cGACCUGGUCCCCacGCUgcgCCUGUUCg -3'
miRNA:   3'- acUUGGACUAGGGGccCGA---GGACAGG- -5'
10975 5' -57.8 NC_002794.1 + 73875 0.73 0.531366
Target:  5'- cGGACCggGAcgaCCCGGGuCUCCUG-CCg -3'
miRNA:   3'- aCUUGGa-CUag-GGGCCC-GAGGACaGG- -5'
10975 5' -57.8 NC_002794.1 + 67049 0.66 0.904536
Target:  5'- cGGACCcgGcGUCCgUGGGCUCCUcgcuggCCu -3'
miRNA:   3'- aCUUGGa-C-UAGGgGCCCGAGGAca----GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.