Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 52009 | 0.66 | 0.891374 |
|
Target: 5'- aGuACCUGAUCUaCGGGCUCgaGcacuacuUCCu -3' miRNA: 3'- aCuUGGACUAGGgGCCCGAGgaC-------AGG- -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 115854 | 0.66 | 0.889416 |
|
Target: 5'- cGGGCCUGGgacgcgcgaggggUCCgGGGCgUCCggggcGUCCg -3' miRNA: 3'- aCUUGGACUa------------GGGgCCCG-AGGa----CAGG- -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 101001 | 0.67 | 0.864462 |
|
Target: 5'- aGAGCUg---CCgCGGGCcuUCCUGUCg -3' miRNA: 3'- aCUUGGacuaGGgGCCCG--AGGACAGg -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 90575 | 0.66 | 0.885443 |
|
Target: 5'- -cGGCg-GGUCCCgGGcGCUCCaGUCCc -3' miRNA: 3'- acUUGgaCUAGGGgCC-CGAGGaCAGG- -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 35816 | 0.68 | 0.808931 |
|
Target: 5'- cGGACCcGGUUUCCGGGCcgCCg--CCa -3' miRNA: 3'- aCUUGGaCUAGGGGCCCGa-GGacaGG- -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 186199 | 0.67 | 0.85707 |
|
Target: 5'- uUGAACCgcgGG-CCCCaGGGCagauggcggUCCggGUCCc -3' miRNA: 3'- -ACUUGGa--CUaGGGG-CCCG---------AGGa-CAGG- -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 138728 | 0.67 | 0.85707 |
|
Target: 5'- cGAGCCggcucgacggGGUCCCCGGccCUCCgGgggCCg -3' miRNA: 3'- aCUUGGa---------CUAGGGGCCc-GAGGaCa--GG- -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 13025 | 0.67 | 0.849487 |
|
Target: 5'- cGcGCCUGuUCCUCGGGUaCCggcGUCUg -3' miRNA: 3'- aCuUGGACuAGGGGCCCGaGGa--CAGG- -5' |
|||||||
| 10975 | 5' | -57.8 | NC_002794.1 | + | 152415 | 0.74 | 0.448321 |
|
Target: 5'- -cGACCUGcugCCCCGGGCcgUCUGUCg -3' miRNA: 3'- acUUGGACua-GGGGCCCGa-GGACAGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home