miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10977 3' -58.4 NC_002794.1 + 115829 0.66 0.884474
Target:  5'- -cUGGAUCGGcGGgGCCCGgcgGGCucggGCCUGg -3'
miRNA:   3'- caGCCUAGCU-CUgCGGGC---UCG----UGGAC- -5'
10977 3' -58.4 NC_002794.1 + 82679 0.66 0.884474
Target:  5'- -gCGGAUCGcacgccguuCGCCCGGcGCGCCg- -3'
miRNA:   3'- caGCCUAGCucu------GCGGGCU-CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 60798 0.66 0.884474
Target:  5'- cUCGGAccaUGAcGGCGCCCGA-CACCa- -3'
miRNA:   3'- cAGCCUa--GCU-CUGCGGGCUcGUGGac -5'
10977 3' -58.4 NC_002794.1 + 175291 0.66 0.877679
Target:  5'- uUCGGAaCGuGACGCUCGAGguaACCc- -3'
miRNA:   3'- cAGCCUaGCuCUGCGGGCUCg--UGGac -5'
10977 3' -58.4 NC_002794.1 + 10957 0.66 0.877679
Target:  5'- -cCGGAggggccggcCGAGACGUCCGA-UGCCUGc -3'
miRNA:   3'- caGCCUa--------GCUCUGCGGGCUcGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 136692 0.66 0.877679
Target:  5'- aUCGGAUCcuuccaGCGCCCGgugcaGGCGCCg- -3'
miRNA:   3'- cAGCCUAGcuc---UGCGGGC-----UCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 120212 0.66 0.877679
Target:  5'- --gGGGUCGcGcCGCCCGuGUACCa- -3'
miRNA:   3'- cagCCUAGCuCuGCGGGCuCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 63323 0.66 0.877679
Target:  5'- -cCGG--CGGGGgGCCCGAGCGCg-- -3'
miRNA:   3'- caGCCuaGCUCUgCGGGCUCGUGgac -5'
10977 3' -58.4 NC_002794.1 + 66813 0.66 0.863482
Target:  5'- -cCGGcAUCGucaGGGCGCCCGgcgcgacuccgGGCGCCg- -3'
miRNA:   3'- caGCC-UAGC---UCUGCGGGC-----------UCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 85015 0.66 0.863482
Target:  5'- cUCGGGUgcccCGGGcccACGCUCGGGUGCCUc -3'
miRNA:   3'- cAGCCUA----GCUC---UGCGGGCUCGUGGAc -5'
10977 3' -58.4 NC_002794.1 + 68771 0.66 0.863482
Target:  5'- -cCGGggCGccGGACGCCCGGcucucGCGCCc- -3'
miRNA:   3'- caGCCuaGC--UCUGCGGGCU-----CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 58952 0.66 0.85609
Target:  5'- --aGGA-CGAGcCGCucuucguggaggCCGAGCGCCUGc -3'
miRNA:   3'- cagCCUaGCUCuGCG------------GGCUCGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 31960 0.66 0.848509
Target:  5'- cGUCuGGuuGUCGuacGACGUCuCGAGCGCCUc -3'
miRNA:   3'- -CAG-CC--UAGCu--CUGCGG-GCUCGUGGAc -5'
10977 3' -58.4 NC_002794.1 + 12169 0.66 0.848509
Target:  5'- -cCGGAUCGucgccgccGACGCcgccgcggCCGGGCGCCg- -3'
miRNA:   3'- caGCCUAGCu-------CUGCG--------GGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 51976 0.67 0.843873
Target:  5'- -cCGGcAUCGuGGCGCUCGgccgcuaccgagagcAGUACCUGa -3'
miRNA:   3'- caGCC-UAGCuCUGCGGGC---------------UCGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 20612 0.67 0.840746
Target:  5'- -cCGGcuUCGAGAUGCCCG-GCuCCg- -3'
miRNA:   3'- caGCCu-AGCUCUGCGGGCuCGuGGac -5'
10977 3' -58.4 NC_002794.1 + 14590 0.67 0.840746
Target:  5'- -gCGGGccguggCGAG-CGCgCCGGGCACCg- -3'
miRNA:   3'- caGCCUa-----GCUCuGCG-GGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 81409 0.67 0.840746
Target:  5'- -cCGGcUCGGGAgcugcuCGCCCGGcuucgagaccGCGCCUGu -3'
miRNA:   3'- caGCCuAGCUCU------GCGGGCU----------CGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 128427 0.67 0.83996
Target:  5'- --gGGAUgacCGGGugGCCCGcgcgcacGGCGCCUc -3'
miRNA:   3'- cagCCUA---GCUCugCGGGC-------UCGUGGAc -5'
10977 3' -58.4 NC_002794.1 + 141023 0.67 0.832806
Target:  5'- uUCGGcgccccGUCGAGGC-CCCGAcGguCCUGa -3'
miRNA:   3'- cAGCC------UAGCUCUGcGGGCU-CguGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.