miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10977 3' -58.4 NC_002794.1 + 34853 0.76 0.328279
Target:  5'- cGUCGGAgCG-GGCGCCgCGGGCGCCg- -3'
miRNA:   3'- -CAGCCUaGCuCUGCGG-GCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 151513 0.74 0.448519
Target:  5'- cUCGGuUCGGGugGCCUGGuGCGCCa- -3'
miRNA:   3'- cAGCCuAGCUCugCGGGCU-CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 145514 0.73 0.475362
Target:  5'- --aGGGgugcgCGAGGCcgGCCCGAGCGCCUc -3'
miRNA:   3'- cagCCUa----GCUCUG--CGGGCUCGUGGAc -5'
10977 3' -58.4 NC_002794.1 + 57699 0.73 0.484488
Target:  5'- cUCGGcgagaagaaCGuGGCGCUCGAGCACCUGc -3'
miRNA:   3'- cAGCCua-------GCuCUGCGGGCUCGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 22597 0.72 0.549498
Target:  5'- cUCGGcacgGUCGGGACGCUCGAGCcgaucggGCCg- -3'
miRNA:   3'- cAGCC----UAGCUCUGCGGGCUCG-------UGGac -5'
10977 3' -58.4 NC_002794.1 + 91339 0.72 0.554326
Target:  5'- -cUGGGUC-AGGCGCugcgcuucggccacaCCGAGCACCUGa -3'
miRNA:   3'- caGCCUAGcUCUGCG---------------GGCUCGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 69717 0.72 0.560134
Target:  5'- aUCGGcaccGUCGAGugcCGCCgGAGCGCCa- -3'
miRNA:   3'- cAGCC----UAGCUCu--GCGGgCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 96765 0.71 0.589405
Target:  5'- -cCGGcgGUCGAGuCGCCCGGGguCCUc -3'
miRNA:   3'- caGCC--UAGCUCuGCGGGCUCguGGAc -5'
10977 3' -58.4 NC_002794.1 + 106239 0.71 0.618934
Target:  5'- cUCGGGUCGcAGAcCGCCgcgaaccggCGAGCGCCg- -3'
miRNA:   3'- cAGCCUAGC-UCU-GCGG---------GCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 73874 0.7 0.638677
Target:  5'- -gCGGAcCGGGACGaCCCGGGUcuCCUGc -3'
miRNA:   3'- caGCCUaGCUCUGC-GGGCUCGu-GGAC- -5'
10977 3' -58.4 NC_002794.1 + 52783 0.7 0.687822
Target:  5'- --gGGAUCGuGACGCUCGAGcCGCUc- -3'
miRNA:   3'- cagCCUAGCuCUGCGGGCUC-GUGGac -5'
10977 3' -58.4 NC_002794.1 + 12262 0.7 0.687822
Target:  5'- -cCGGAaCGAGACGUcuCCGGguuuccGCGCCUGg -3'
miRNA:   3'- caGCCUaGCUCUGCG--GGCU------CGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 93860 0.7 0.687822
Target:  5'- -gCGGcggCGAGcCGCCCGAGUACgaGg -3'
miRNA:   3'- caGCCua-GCUCuGCGGGCUCGUGgaC- -5'
10977 3' -58.4 NC_002794.1 + 183684 0.69 0.707233
Target:  5'- -aCGGGUCGAG-CGCCCGccGCGCg-- -3'
miRNA:   3'- caGCCUAGCUCuGCGGGCu-CGUGgac -5'
10977 3' -58.4 NC_002794.1 + 95586 0.69 0.725455
Target:  5'- uGUCGGcUCGAucuacgcGGCGCCgGAGCgcaucguggACCUGa -3'
miRNA:   3'- -CAGCCuAGCU-------CUGCGGgCUCG---------UGGAC- -5'
10977 3' -58.4 NC_002794.1 + 6136 0.69 0.726407
Target:  5'- gGUC-GAUCGGGGggcggaGCCCGAGCAUCa- -3'
miRNA:   3'- -CAGcCUAGCUCUg-----CGGGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 150589 0.69 0.735885
Target:  5'- cUCGGGcgccCGAGgACGgCCGGGCGCCg- -3'
miRNA:   3'- cAGCCUa---GCUC-UGCgGGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 53769 0.69 0.735885
Target:  5'- -cCGGcggCGGGACGCCCGcgacGCGCCc- -3'
miRNA:   3'- caGCCua-GCUCUGCGGGCu---CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 150098 0.68 0.754581
Target:  5'- -gCGGAgCGuGAgGCCgGAGCGCCg- -3'
miRNA:   3'- caGCCUaGCuCUgCGGgCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 80522 0.68 0.754581
Target:  5'- -gCGGcgCGcGACGCCUG-GCACCg- -3'
miRNA:   3'- caGCCuaGCuCUGCGGGCuCGUGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.