Results 21 - 40 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10977 | 3' | -58.4 | NC_002794.1 | + | 136517 | 0.68 | 0.758274 |
Target: 5'- -gCGGggCGAGGUagagaugguugaagaGCCCGAGCACCg- -3' miRNA: 3'- caGCCuaGCUCUG---------------CGGGCUCGUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 129256 | 0.68 | 0.763782 |
Target: 5'- cUCGGGUCGAG-CGCCUcgucguGAGCggGCCg- -3' miRNA: 3'- cAGCCUAGCUCuGCGGG------CUCG--UGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 83875 | 0.68 | 0.77197 |
Target: 5'- gGUCGGcgCGAcggccccgggcucGGCGCCCGAcgagcccgGCACCc- -3' miRNA: 3'- -CAGCCuaGCU-------------CUGCGGGCU--------CGUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 147397 | 0.68 | 0.790701 |
Target: 5'- aUCGGcUCGAucCGCCaCGAGCGCUa- -3' miRNA: 3'- cAGCCuAGCUcuGCGG-GCUCGUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 100131 | 0.68 | 0.790701 |
Target: 5'- -aCGGGUaCGGGACGCggccguucgCCGAccuGUACCUGg -3' miRNA: 3'- caGCCUA-GCUCUGCG---------GGCU---CGUGGAC- -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 152921 | 0.68 | 0.790701 |
Target: 5'- -cCGGAUCGAG--GCCCGGGCguacaucgACCUc -3' miRNA: 3'- caGCCUAGCUCugCGGGCUCG--------UGGAc -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 88889 | 0.67 | 0.799418 |
Target: 5'- -gCGGAUCGuccuaugcGCGCUCGAGUGCCg- -3' miRNA: 3'- caGCCUAGCuc------UGCGGGCUCGUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 106349 | 0.67 | 0.807995 |
Target: 5'- -cCGGGUCGAcGGCGggCGGGCGCCg- -3' miRNA: 3'- caGCCUAGCU-CUGCggGCUCGUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 57431 | 0.67 | 0.816424 |
Target: 5'- gGUCGGcac--GGCGCCCGucauccAGCACCUGc -3' miRNA: 3'- -CAGCCuagcuCUGCGGGC------UCGUGGAC- -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 183181 | 0.67 | 0.824696 |
Target: 5'- gGUCGGGgacCGAGACGCgCCGccaCGCCg- -3' miRNA: 3'- -CAGCCUa--GCUCUGCG-GGCuc-GUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 101686 | 0.67 | 0.824696 |
Target: 5'- -gCGGAgcgCGAGcccgagccgGCGCCCGAGgACgUGu -3' miRNA: 3'- caGCCUa--GCUC---------UGCGGGCUCgUGgAC- -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 144888 | 0.67 | 0.824696 |
Target: 5'- -gCGGggCGAGACGCUCGcGC-CgCUGg -3' miRNA: 3'- caGCCuaGCUCUGCGGGCuCGuG-GAC- -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 116389 | 0.67 | 0.830391 |
Target: 5'- -gCGGGUCGaAGACgaagguguggcgggGCgCGAGCACCa- -3' miRNA: 3'- caGCCUAGC-UCUG--------------CGgGCUCGUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 141023 | 0.67 | 0.832806 |
Target: 5'- uUCGGcgccccGUCGAGGC-CCCGAcGguCCUGa -3' miRNA: 3'- cAGCC------UAGCUCUGcGGGCU-CguGGAC- -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 184481 | 0.67 | 0.832806 |
Target: 5'- -aCGGcgCGcggggccccGGACGCCCGGGCGgCg- -3' miRNA: 3'- caGCCuaGC---------UCUGCGGGCUCGUgGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 128427 | 0.67 | 0.83996 |
Target: 5'- --gGGAUgacCGGGugGCCCGcgcgcacGGCGCCUc -3' miRNA: 3'- cagCCUA---GCUCugCGGGC-------UCGUGGAc -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 20612 | 0.67 | 0.840746 |
Target: 5'- -cCGGcuUCGAGAUGCCCG-GCuCCg- -3' miRNA: 3'- caGCCu-AGCUCUGCGGGCuCGuGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 81409 | 0.67 | 0.840746 |
Target: 5'- -cCGGcUCGGGAgcugcuCGCCCGGcuucgagaccGCGCCUGu -3' miRNA: 3'- caGCCuAGCUCU------GCGGGCU----------CGUGGAC- -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 14590 | 0.67 | 0.840746 |
Target: 5'- -gCGGGccguggCGAG-CGCgCCGGGCACCg- -3' miRNA: 3'- caGCCUa-----GCUCuGCG-GGCUCGUGGac -5' |
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10977 | 3' | -58.4 | NC_002794.1 | + | 51976 | 0.67 | 0.843873 |
Target: 5'- -cCGGcAUCGuGGCGCUCGgccgcuaccgagagcAGUACCUGa -3' miRNA: 3'- caGCC-UAGCuCUGCGGGC---------------UCGUGGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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