miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10977 3' -58.4 NC_002794.1 + 184481 0.67 0.832806
Target:  5'- -aCGGcgCGcggggccccGGACGCCCGGGCGgCg- -3'
miRNA:   3'- caGCCuaGC---------UCUGCGGGCUCGUgGac -5'
10977 3' -58.4 NC_002794.1 + 116389 0.67 0.830391
Target:  5'- -gCGGGUCGaAGACgaagguguggcgggGCgCGAGCACCa- -3'
miRNA:   3'- caGCCUAGC-UCUG--------------CGgGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 183181 0.67 0.824696
Target:  5'- gGUCGGGgacCGAGACGCgCCGccaCGCCg- -3'
miRNA:   3'- -CAGCCUa--GCUCUGCG-GGCuc-GUGGac -5'
10977 3' -58.4 NC_002794.1 + 144888 0.67 0.824696
Target:  5'- -gCGGggCGAGACGCUCGcGC-CgCUGg -3'
miRNA:   3'- caGCCuaGCUCUGCGGGCuCGuG-GAC- -5'
10977 3' -58.4 NC_002794.1 + 101686 0.67 0.824696
Target:  5'- -gCGGAgcgCGAGcccgagccgGCGCCCGAGgACgUGu -3'
miRNA:   3'- caGCCUa--GCUC---------UGCGGGCUCgUGgAC- -5'
10977 3' -58.4 NC_002794.1 + 57431 0.67 0.816424
Target:  5'- gGUCGGcac--GGCGCCCGucauccAGCACCUGc -3'
miRNA:   3'- -CAGCCuagcuCUGCGGGC------UCGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 106349 0.67 0.807995
Target:  5'- -cCGGGUCGAcGGCGggCGGGCGCCg- -3'
miRNA:   3'- caGCCUAGCU-CUGCggGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 88889 0.67 0.799418
Target:  5'- -gCGGAUCGuccuaugcGCGCUCGAGUGCCg- -3'
miRNA:   3'- caGCCUAGCuc------UGCGGGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 100131 0.68 0.790701
Target:  5'- -aCGGGUaCGGGACGCggccguucgCCGAccuGUACCUGg -3'
miRNA:   3'- caGCCUA-GCUCUGCG---------GGCU---CGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 152921 0.68 0.790701
Target:  5'- -cCGGAUCGAG--GCCCGGGCguacaucgACCUc -3'
miRNA:   3'- caGCCUAGCUCugCGGGCUCG--------UGGAc -5'
10977 3' -58.4 NC_002794.1 + 147397 0.68 0.790701
Target:  5'- aUCGGcUCGAucCGCCaCGAGCGCUa- -3'
miRNA:   3'- cAGCCuAGCUcuGCGG-GCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 83875 0.68 0.77197
Target:  5'- gGUCGGcgCGAcggccccgggcucGGCGCCCGAcgagcccgGCACCc- -3'
miRNA:   3'- -CAGCCuaGCU-------------CUGCGGGCU--------CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 129256 0.68 0.763782
Target:  5'- cUCGGGUCGAG-CGCCUcgucguGAGCggGCCg- -3'
miRNA:   3'- cAGCCUAGCUCuGCGGG------CUCG--UGGac -5'
10977 3' -58.4 NC_002794.1 + 136517 0.68 0.758274
Target:  5'- -gCGGggCGAGGUagagaugguugaagaGCCCGAGCACCg- -3'
miRNA:   3'- caGCCuaGCUCUG---------------CGGGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 150098 0.68 0.754581
Target:  5'- -gCGGAgCGuGAgGCCgGAGCGCCg- -3'
miRNA:   3'- caGCCUaGCuCUgCGGgCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 80522 0.68 0.754581
Target:  5'- -gCGGcgCGcGACGCCUG-GCACCg- -3'
miRNA:   3'- caGCCuaGCuCUGCGGGCuCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 150589 0.69 0.735885
Target:  5'- cUCGGGcgccCGAGgACGgCCGGGCGCCg- -3'
miRNA:   3'- cAGCCUa---GCUC-UGCgGGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 53769 0.69 0.735885
Target:  5'- -cCGGcggCGGGACGCCCGcgacGCGCCc- -3'
miRNA:   3'- caGCCua-GCUCUGCGGGCu---CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 6136 0.69 0.726407
Target:  5'- gGUC-GAUCGGGGggcggaGCCCGAGCAUCa- -3'
miRNA:   3'- -CAGcCUAGCUCUg-----CGGGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 95586 0.69 0.725455
Target:  5'- uGUCGGcUCGAucuacgcGGCGCCgGAGCgcaucguggACCUGa -3'
miRNA:   3'- -CAGCCuAGCU-------CUGCGGgCUCG---------UGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.