miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10977 3' -58.4 NC_002794.1 + 73874 0.7 0.638677
Target:  5'- -gCGGAcCGGGACGaCCCGGGUcuCCUGc -3'
miRNA:   3'- caGCCUaGCUCUGC-GGGCUCGu-GGAC- -5'
10977 3' -58.4 NC_002794.1 + 80522 0.68 0.754581
Target:  5'- -gCGGcgCGcGACGCCUG-GCACCg- -3'
miRNA:   3'- caGCCuaGCuCUGCGGGCuCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 81409 0.67 0.840746
Target:  5'- -cCGGcUCGGGAgcugcuCGCCCGGcuucgagaccGCGCCUGu -3'
miRNA:   3'- caGCCuAGCUCU------GCGGGCU----------CGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 82679 0.66 0.884474
Target:  5'- -gCGGAUCGcacgccguuCGCCCGGcGCGCCg- -3'
miRNA:   3'- caGCCUAGCucu------GCGGGCU-CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 83875 0.68 0.77197
Target:  5'- gGUCGGcgCGAcggccccgggcucGGCGCCCGAcgagcccgGCACCc- -3'
miRNA:   3'- -CAGCCuaGCU-------------CUGCGGGCU--------CGUGGac -5'
10977 3' -58.4 NC_002794.1 + 85015 0.66 0.863482
Target:  5'- cUCGGGUgcccCGGGcccACGCUCGGGUGCCUc -3'
miRNA:   3'- cAGCCUA----GCUC---UGCGGGCUCGUGGAc -5'
10977 3' -58.4 NC_002794.1 + 88889 0.67 0.799418
Target:  5'- -gCGGAUCGuccuaugcGCGCUCGAGUGCCg- -3'
miRNA:   3'- caGCCUAGCuc------UGCGGGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 91339 0.72 0.554326
Target:  5'- -cUGGGUC-AGGCGCugcgcuucggccacaCCGAGCACCUGa -3'
miRNA:   3'- caGCCUAGcUCUGCG---------------GGCUCGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 93860 0.7 0.687822
Target:  5'- -gCGGcggCGAGcCGCCCGAGUACgaGg -3'
miRNA:   3'- caGCCua-GCUCuGCGGGCUCGUGgaC- -5'
10977 3' -58.4 NC_002794.1 + 95586 0.69 0.725455
Target:  5'- uGUCGGcUCGAucuacgcGGCGCCgGAGCgcaucguggACCUGa -3'
miRNA:   3'- -CAGCCuAGCU-------CUGCGGgCUCG---------UGGAC- -5'
10977 3' -58.4 NC_002794.1 + 96765 0.71 0.589405
Target:  5'- -cCGGcgGUCGAGuCGCCCGGGguCCUc -3'
miRNA:   3'- caGCC--UAGCUCuGCGGGCUCguGGAc -5'
10977 3' -58.4 NC_002794.1 + 100131 0.68 0.790701
Target:  5'- -aCGGGUaCGGGACGCggccguucgCCGAccuGUACCUGg -3'
miRNA:   3'- caGCCUA-GCUCUGCG---------GGCU---CGUGGAC- -5'
10977 3' -58.4 NC_002794.1 + 101686 0.67 0.824696
Target:  5'- -gCGGAgcgCGAGcccgagccgGCGCCCGAGgACgUGu -3'
miRNA:   3'- caGCCUa--GCUC---------UGCGGGCUCgUGgAC- -5'
10977 3' -58.4 NC_002794.1 + 106239 0.71 0.618934
Target:  5'- cUCGGGUCGcAGAcCGCCgcgaaccggCGAGCGCCg- -3'
miRNA:   3'- cAGCCUAGC-UCU-GCGG---------GCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 106349 0.67 0.807995
Target:  5'- -cCGGGUCGAcGGCGggCGGGCGCCg- -3'
miRNA:   3'- caGCCUAGCU-CUGCggGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 115829 0.66 0.884474
Target:  5'- -cUGGAUCGGcGGgGCCCGgcgGGCucggGCCUGg -3'
miRNA:   3'- caGCCUAGCU-CUgCGGGC---UCG----UGGAC- -5'
10977 3' -58.4 NC_002794.1 + 116389 0.67 0.830391
Target:  5'- -gCGGGUCGaAGACgaagguguggcgggGCgCGAGCACCa- -3'
miRNA:   3'- caGCCUAGC-UCUG--------------CGgGCUCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 120212 0.66 0.877679
Target:  5'- --gGGGUCGcGcCGCCCGuGUACCa- -3'
miRNA:   3'- cagCCUAGCuCuGCGGGCuCGUGGac -5'
10977 3' -58.4 NC_002794.1 + 128427 0.67 0.83996
Target:  5'- --gGGAUgacCGGGugGCCCGcgcgcacGGCGCCUc -3'
miRNA:   3'- cagCCUA---GCUCugCGGGC-------UCGUGGAc -5'
10977 3' -58.4 NC_002794.1 + 129256 0.68 0.763782
Target:  5'- cUCGGGUCGAG-CGCCUcgucguGAGCggGCCg- -3'
miRNA:   3'- cAGCCUAGCUCuGCGGG------CUCG--UGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.