miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10977 5' -58.2 NC_002794.1 + 13782 0.66 0.861026
Target:  5'- cACCCGGgugGCUCcGGCcgUCUUCGcgacgggcccgGCCGg -3'
miRNA:   3'- -UGGGCCa--CGAGcCCG--AGAAGU-----------UGGUa -5'
10977 5' -58.2 NC_002794.1 + 136567 0.66 0.853436
Target:  5'- cGCa-GGUGCUCGGGCgUCU-CGAuCCGa -3'
miRNA:   3'- -UGggCCACGAGCCCG-AGAaGUU-GGUa -5'
10977 5' -58.2 NC_002794.1 + 70218 0.66 0.845654
Target:  5'- cGCCCGGacGgUCGGGCggg-CGGCCGg -3'
miRNA:   3'- -UGGGCCa-CgAGCCCGagaaGUUGGUa -5'
10977 5' -58.2 NC_002794.1 + 142061 0.66 0.845654
Target:  5'- uUCCGGUGC--GGGCUCcUCggUCAa -3'
miRNA:   3'- uGGGCCACGagCCCGAGaAGuuGGUa -5'
10977 5' -58.2 NC_002794.1 + 37007 0.66 0.837684
Target:  5'- gACCCGGUagagcgGCUCGGGCcCgauguaGACCu- -3'
miRNA:   3'- -UGGGCCA------CGAGCCCGaGaag---UUGGua -5'
10977 5' -58.2 NC_002794.1 + 80753 0.67 0.821211
Target:  5'- gUCCGGgccacgcGCUCGGacCUCUUCGACCu- -3'
miRNA:   3'- uGGGCCa------CGAGCCc-GAGAAGUUGGua -5'
10977 5' -58.2 NC_002794.1 + 4761 0.67 0.812723
Target:  5'- --aCGGUGCUCauGGGCUCg--AACCAg -3'
miRNA:   3'- uggGCCACGAG--CCCGAGaagUUGGUa -5'
10977 5' -58.2 NC_002794.1 + 135976 0.67 0.79528
Target:  5'- aGCCCGGcGC-CGGGCUCcUCuucGCUGUc -3'
miRNA:   3'- -UGGGCCaCGaGCCCGAGaAGu--UGGUA- -5'
10977 5' -58.2 NC_002794.1 + 53108 0.67 0.786341
Target:  5'- cCCCGGcgGUUcCGGaGCUCgcgUCGACCGc -3'
miRNA:   3'- uGGGCCa-CGA-GCC-CGAGa--AGUUGGUa -5'
10977 5' -58.2 NC_002794.1 + 35990 0.67 0.783633
Target:  5'- gACCCGGUuuuauugucgcgggGCUCGGGCggCggaaUCcGCCGUc -3'
miRNA:   3'- -UGGGCCA--------------CGAGCCCGa-Ga---AGuUGGUA- -5'
10977 5' -58.2 NC_002794.1 + 187838 0.68 0.758758
Target:  5'- gGCUCGGcGCgccgaGGGCUCUgccCAGCCGc -3'
miRNA:   3'- -UGGGCCaCGag---CCCGAGAa--GUUGGUa -5'
10977 5' -58.2 NC_002794.1 + 121547 0.68 0.755942
Target:  5'- aGCCCGGUGacgacgagacgagcUUCGGGaUCUUCAGCg-- -3'
miRNA:   3'- -UGGGCCAC--------------GAGCCCgAGAAGUUGgua -5'
10977 5' -58.2 NC_002794.1 + 45610 0.68 0.730203
Target:  5'- gACCCGGaaCUCGGGCUUcUCGuACCc- -3'
miRNA:   3'- -UGGGCCacGAGCCCGAGaAGU-UGGua -5'
10977 5' -58.2 NC_002794.1 + 92331 0.68 0.724396
Target:  5'- gGCCCGGgcgggcgGCUCGgcgucaacgucgaccGGCUCaaguacUUCAACCAg -3'
miRNA:   3'- -UGGGCCa------CGAGC---------------CCGAG------AAGUUGGUa -5'
10977 5' -58.2 NC_002794.1 + 68333 0.68 0.720509
Target:  5'- gGCCUGGUGaC-CGGGUUCaUCcGCCAa -3'
miRNA:   3'- -UGGGCCAC-GaGCCCGAGaAGuUGGUa -5'
10977 5' -58.2 NC_002794.1 + 115841 0.69 0.710742
Target:  5'- gGCCCGGcggGCUCGGGC-CUggGACgCGc -3'
miRNA:   3'- -UGGGCCa--CGAGCCCGaGAagUUG-GUa -5'
10977 5' -58.2 NC_002794.1 + 137064 0.69 0.700912
Target:  5'- uGCCCGucgg-CGGGCUCUUCGcgcGCCAUg -3'
miRNA:   3'- -UGGGCcacgaGCCCGAGAAGU---UGGUA- -5'
10977 5' -58.2 NC_002794.1 + 99274 0.69 0.691025
Target:  5'- gGCuCCGGcGCgcuccCGGGCUCUUCcgcGACCGc -3'
miRNA:   3'- -UG-GGCCaCGa----GCCCGAGAAG---UUGGUa -5'
10977 5' -58.2 NC_002794.1 + 17442 0.69 0.691025
Target:  5'- -gCCGGcGCUCGGGC-CcgCGACCGa -3'
miRNA:   3'- ugGGCCaCGAGCCCGaGaaGUUGGUa -5'
10977 5' -58.2 NC_002794.1 + 112916 0.7 0.620955
Target:  5'- gUCCaGGUGCUCGGGCUUcUCGAgCu- -3'
miRNA:   3'- uGGG-CCACGAGCCCGAGaAGUUgGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.