miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 3' -57.9 NC_002794.1 + 45249 0.66 0.913447
Target:  5'- uGACGUUG-GUGacgacGGCGCGACaGUCCu -3'
miRNA:   3'- -CUGCAGCgCAUac---CCGCGCUG-CAGGc -5'
10981 3' -57.9 NC_002794.1 + 12222 0.66 0.913447
Target:  5'- cGGCGUCgGCGgcgccGGCgGCGcCGUCCGc -3'
miRNA:   3'- -CUGCAG-CGCauac-CCG-CGCuGCAGGC- -5'
10981 3' -57.9 NC_002794.1 + 120711 0.66 0.913447
Target:  5'- aGGCGcCGcCGUcguucuucgucGUGGGCaCGGCgGUCCGg -3'
miRNA:   3'- -CUGCaGC-GCA-----------UACCCGcGCUG-CAGGC- -5'
10981 3' -57.9 NC_002794.1 + 36353 0.66 0.913447
Target:  5'- cGGCGUgCGCGgccaccGGGUGCG-CGcCCGc -3'
miRNA:   3'- -CUGCA-GCGCaua---CCCGCGCuGCaGGC- -5'
10981 3' -57.9 NC_002794.1 + 122183 0.66 0.907694
Target:  5'- cGGCGcgCGCGUGUGcGaCGCGGCGaagcggugCCGg -3'
miRNA:   3'- -CUGCa-GCGCAUACcC-GCGCUGCa-------GGC- -5'
10981 3' -57.9 NC_002794.1 + 142409 0.66 0.907694
Target:  5'- cGGCGUCgGCGgcgccGGGCGCGAUuaggaaauucUCCGa -3'
miRNA:   3'- -CUGCAG-CGCaua--CCCGCGCUGc---------AGGC- -5'
10981 3' -57.9 NC_002794.1 + 110266 0.66 0.901724
Target:  5'- cGGCGUCGCGacgGcGGC-CGcCGUCCu -3'
miRNA:   3'- -CUGCAGCGCauaC-CCGcGCuGCAGGc -5'
10981 3' -57.9 NC_002794.1 + 129071 0.66 0.901724
Target:  5'- -gUGUCGCGgcUGGcG-GCGGacCGUCCGg -3'
miRNA:   3'- cuGCAGCGCauACC-CgCGCU--GCAGGC- -5'
10981 3' -57.9 NC_002794.1 + 119072 0.66 0.899891
Target:  5'- cGCGUCGCGgacguacucGGCGCccgguugcuggugGGCGUCCa -3'
miRNA:   3'- cUGCAGCGCauac-----CCGCG-------------CUGCAGGc -5'
10981 3' -57.9 NC_002794.1 + 68934 0.66 0.895541
Target:  5'- -uCGUCGCccgcGGGcCGCGGCG-CCGg -3'
miRNA:   3'- cuGCAGCGcauaCCC-GCGCUGCaGGC- -5'
10981 3' -57.9 NC_002794.1 + 189483 0.66 0.895541
Target:  5'- gGGCGUCGUGUGcacccagcUGGGCaccuCG-UGUCCGu -3'
miRNA:   3'- -CUGCAGCGCAU--------ACCCGc---GCuGCAGGC- -5'
10981 3' -57.9 NC_002794.1 + 107522 0.66 0.895541
Target:  5'- cGACGcCGaCGgcc-GGCGCGGCG-CCGg -3'
miRNA:   3'- -CUGCaGC-GCauacCCGCGCUGCaGGC- -5'
10981 3' -57.9 NC_002794.1 + 139136 0.66 0.889146
Target:  5'- cGGCGUCGCGguaGUuGGUGUucucgcauucGACGUCCc -3'
miRNA:   3'- -CUGCAGCGCa--UAcCCGCG----------CUGCAGGc -5'
10981 3' -57.9 NC_002794.1 + 92300 0.66 0.889146
Target:  5'- cGACGagGCGgggcUGGGCGCgGGCGgcgggggcCCGg -3'
miRNA:   3'- -CUGCagCGCau--ACCCGCG-CUGCa-------GGC- -5'
10981 3' -57.9 NC_002794.1 + 96594 0.67 0.88521
Target:  5'- aACGUCGacgguccgcucuuucUGUAcgcGGGCgGCGGCGUCUGg -3'
miRNA:   3'- cUGCAGC---------------GCAUa--CCCG-CGCUGCAGGC- -5'
10981 3' -57.9 NC_002794.1 + 126433 0.67 0.882544
Target:  5'- --gGUCGagGUGUGGGCGCcucGGCccuggGUCCGg -3'
miRNA:   3'- cugCAGCg-CAUACCCGCG---CUG-----CAGGC- -5'
10981 3' -57.9 NC_002794.1 + 107883 0.67 0.875738
Target:  5'- aGGCGgCGCGgc-GGGUGCGGCuG-CCGg -3'
miRNA:   3'- -CUGCaGCGCauaCCCGCGCUG-CaGGC- -5'
10981 3' -57.9 NC_002794.1 + 116070 0.67 0.875738
Target:  5'- uGGgGUCGCGgagcgcucGGCGCGGCGgucgucgCCGg -3'
miRNA:   3'- -CUgCAGCGCauac----CCGCGCUGCa------GGC- -5'
10981 3' -57.9 NC_002794.1 + 166246 0.67 0.875738
Target:  5'- uGACGUggaaGUGUGUGGGCgGCGGCcaUCGu -3'
miRNA:   3'- -CUGCAg---CGCAUACCCG-CGCUGcaGGC- -5'
10981 3' -57.9 NC_002794.1 + 113154 0.67 0.875738
Target:  5'- cGCGUCaGCGUGUagcgcgcgcGGGCGgCGGCGgUCgCGg -3'
miRNA:   3'- cUGCAG-CGCAUA---------CCCGC-GCUGC-AG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.