miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 152137 0.65 0.928877
Target:  5'- cUGCCGAGccgguucaacccgcUcCAGCGCCU-GCGggCCGc -3'
miRNA:   3'- -ACGGCUU--------------A-GUCGCGGAgCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 19414 0.66 0.925226
Target:  5'- -cCCGGAUCGggcGCGCCcuccucCGCGA-CCAGg -3'
miRNA:   3'- acGGCUUAGU---CGCGGa-----GCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 113562 0.66 0.925226
Target:  5'- cGCCGGaccGUCuGCGUCUCgGCG-UCCu- -3'
miRNA:   3'- aCGGCU---UAGuCGCGGAG-CGCuAGGuc -5'
10981 5' -56.7 NC_002794.1 + 116802 0.66 0.925226
Target:  5'- aGCCGGcUCgGGCGCCguagCGCGggUCGc -3'
miRNA:   3'- aCGGCUuAG-UCGCGGa---GCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 67377 0.66 0.919815
Target:  5'- gUGUCGAaagaacgcGUCGGCGCCagCGuCGGcgCCAGc -3'
miRNA:   3'- -ACGGCU--------UAGUCGCGGa-GC-GCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 154408 0.66 0.919815
Target:  5'- gUGCCGGuggcCAGCG-CUCGC-AUCCGa -3'
miRNA:   3'- -ACGGCUua--GUCGCgGAGCGcUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 111118 0.66 0.919815
Target:  5'- gGCCGucgaCGGCGCCg-GCGG-CCGGu -3'
miRNA:   3'- aCGGCuua-GUCGCGGagCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 108155 0.66 0.919815
Target:  5'- cGCCGGG--AGCGCCggCGCGAagacgCCGc -3'
miRNA:   3'- aCGGCUUagUCGCGGa-GCGCUa----GGUc -5'
10981 5' -56.7 NC_002794.1 + 142412 0.66 0.919815
Target:  5'- cGUCGg--CGGCGCCgggCGCGAUUaGGa -3'
miRNA:   3'- aCGGCuuaGUCGCGGa--GCGCUAGgUC- -5'
10981 5' -56.7 NC_002794.1 + 16436 0.66 0.919815
Target:  5'- cGCCGAGUCcGCGCUuguUCcCGAcUCCGa -3'
miRNA:   3'- aCGGCUUAGuCGCGG---AGcGCU-AGGUc -5'
10981 5' -56.7 NC_002794.1 + 158877 0.66 0.914174
Target:  5'- cGuuGGAaCAGCGUUUCGCG-UUCGGu -3'
miRNA:   3'- aCggCUUaGUCGCGGAGCGCuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 695 0.66 0.914174
Target:  5'- gGCCgGAGUCGGCuguuuuuggGCCUcucCGCGAccCCGGg -3'
miRNA:   3'- aCGG-CUUAGUCG---------CGGA---GCGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 57431 0.66 0.914174
Target:  5'- gGUCGGcaCGGCGCC-CGUcAUCCAGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGaGCGcUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 116508 0.66 0.914174
Target:  5'- aUGCCGAGgcaGGCGUa--GCcGUCCAGg -3'
miRNA:   3'- -ACGGCUUag-UCGCGgagCGcUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 54227 0.66 0.914174
Target:  5'- cGCCGucUCGGaugaagcgGCCgagcgCGCGGUCCAc -3'
miRNA:   3'- aCGGCuuAGUCg-------CGGa----GCGCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 110064 0.66 0.914174
Target:  5'- cGUCGGAg-AGCGCggaUCGCGGUCguGa -3'
miRNA:   3'- aCGGCUUagUCGCGg--AGCGCUAGguC- -5'
10981 5' -56.7 NC_002794.1 + 191522 0.66 0.914174
Target:  5'- cGCCGGgcGUCGgcccGCGCCUCccGCcgcagucgGGUCCGGg -3'
miRNA:   3'- aCGGCU--UAGU----CGCGGAG--CG--------CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 194818 0.66 0.914174
Target:  5'- aGCCGcagCGacGCGCgCUCGCGGcCCGGc -3'
miRNA:   3'- aCGGCuuaGU--CGCG-GAGCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 186305 0.66 0.914174
Target:  5'- gGCCGGucgccgCGGCGCgCUCGUccUCCAa -3'
miRNA:   3'- aCGGCUua----GUCGCG-GAGCGcuAGGUc -5'
10981 5' -56.7 NC_002794.1 + 151741 0.66 0.914174
Target:  5'- gGCCGc--CGGuCGCCUCGCGcgcucGUCCu- -3'
miRNA:   3'- aCGGCuuaGUC-GCGGAGCGC-----UAGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.