miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 126604 0.67 0.868417
Target:  5'- cGCCGAGgcCGGCGCCgacgUCGCGG-CguGa -3'
miRNA:   3'- aCGGCUUa-GUCGCGG----AGCGCUaGguC- -5'
10981 5' -56.7 NC_002794.1 + 187583 0.67 0.861026
Target:  5'- cGUCGGcgCGGcCGCCgUCGCGAcgcCCGGc -3'
miRNA:   3'- aCGGCUuaGUC-GCGG-AGCGCUa--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 137652 0.67 0.861026
Target:  5'- cGCCGGGccucCGGCGCCgcuggUGCGGacgcacggUCCAGu -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa----GCGCU--------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 123850 0.67 0.861026
Target:  5'- aUGCCGGgcGUCAGCcacgugcucGCCgagCG-GGUCCAGc -3'
miRNA:   3'- -ACGGCU--UAGUCG---------CGGa--GCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 79823 0.67 0.861026
Target:  5'- cGCCGAGU-GGCGCCagGUGAcgCCGa -3'
miRNA:   3'- aCGGCUUAgUCGCGGagCGCUa-GGUc -5'
10981 5' -56.7 NC_002794.1 + 97674 0.67 0.861026
Target:  5'- aUGCUGGAgcgguUCGGCGCCgucaaCGCGcccGUCCGc -3'
miRNA:   3'- -ACGGCUU-----AGUCGCGGa----GCGC---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 127515 0.67 0.875603
Target:  5'- aGCUGGggCuGUGCCgcCGCGAUCCu- -3'
miRNA:   3'- aCGGCUuaGuCGCGGa-GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 187626 0.67 0.881891
Target:  5'- cGCUGGAgaggcgcaagagaUCGcguucguaCGCCUCGCGGUCCAc -3'
miRNA:   3'- aCGGCUU-------------AGUc-------GCGGAGCGCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 107298 0.67 0.882579
Target:  5'- cGUCGAcgCuccucgcgggGGCGCCguccgCGCGGUUCGGc -3'
miRNA:   3'- aCGGCUuaG----------UCGCGGa----GCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 38007 0.67 0.895884
Target:  5'- cGCCGuaggccugCAGCGCUUCGgGAaagcCCGGc -3'
miRNA:   3'- aCGGCuua-----GUCGCGGAGCgCUa---GGUC- -5'
10981 5' -56.7 NC_002794.1 + 66810 0.67 0.895884
Target:  5'- cGcCCGGcaucGUCagGGCGCCcggCGCGAcUCCGGg -3'
miRNA:   3'- aC-GGCU----UAG--UCGCGGa--GCGCU-AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 31331 0.67 0.895884
Target:  5'- cGUCGGcUCGGCGCC-CGCcguGUCCGc -3'
miRNA:   3'- aCGGCUuAGUCGCGGaGCGc--UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 184751 0.67 0.893293
Target:  5'- cGCCGGuccagcguuccacgGUCAGCGCCggcucgcUCGuCGAcaccgucaacUCCGGg -3'
miRNA:   3'- aCGGCU--------------UAGUCGCGG-------AGC-GCU----------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 129256 0.67 0.89524
Target:  5'- -cUCGggUCgAGCGCCUCgucgugaGCGggCCGGu -3'
miRNA:   3'- acGGCuuAG-UCGCGGAG-------CGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 145526 0.67 0.889341
Target:  5'- gGCCGGccCgAGCGCCUCGgGcgCCc- -3'
miRNA:   3'- aCGGCUuaG-UCGCGGAGCgCuaGGuc -5'
10981 5' -56.7 NC_002794.1 + 157499 0.67 0.889341
Target:  5'- gUGCCG-AUCAGCuuaccggcggacGCgCUgGgGAUCCAGu -3'
miRNA:   3'- -ACGGCuUAGUCG------------CG-GAgCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 46140 0.67 0.889341
Target:  5'- cGuCCGAGUCGGCGUCgaUCGCccUCUGGa -3'
miRNA:   3'- aC-GGCUUAGUCGCGG--AGCGcuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 131735 0.67 0.889341
Target:  5'- gGgCGAgAUCGcgcuCGCCUCGCGAccgUCCGGa -3'
miRNA:   3'- aCgGCU-UAGUc---GCGGAGCGCU---AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 118266 0.67 0.882579
Target:  5'- gGCCGGGgcggCGGCGCCggCGuCGGggaccgcgCCGGg -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa-GC-GCUa-------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 96965 0.67 0.889341
Target:  5'- gGCCGAcacCAccGUGCCUCGCGAgcgcgUCaCGGg -3'
miRNA:   3'- aCGGCUua-GU--CGCGGAGCGCU-----AG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.