Results 1 - 20 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10981 | 5' | -56.7 | NC_002794.1 | + | 47409 | 0.76 | 0.395678 |
Target: 5'- aGCCGccGUCGGCGCCgucgCGCGGagcgCCAGg -3' miRNA: 3'- aCGGCu-UAGUCGCGGa---GCGCUa---GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 188340 | 0.75 | 0.474813 |
Target: 5'- cGCCGg--CGGCGCCgUCGCGcccGUCCGGc -3' miRNA: 3'- aCGGCuuaGUCGCGG-AGCGC---UAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 141602 | 0.75 | 0.46562 |
Target: 5'- cGCCGGGcggcUCGGCGaccggCUCGCGGUCUAGc -3' miRNA: 3'- aCGGCUU----AGUCGCg----GAGCGCUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 112078 | 0.75 | 0.456521 |
Target: 5'- aGCCGAGUCAGCaggucCCguugCGCG-UCCAGg -3' miRNA: 3'- aCGGCUUAGUCGc----GGa---GCGCuAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 167737 | 0.73 | 0.580922 |
Target: 5'- gGCaCGAu---GCuGCCUCGCGGUCCGGu -3' miRNA: 3'- aCG-GCUuaguCG-CGGAGCGCUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 194144 | 0.73 | 0.561091 |
Target: 5'- gGCCGcagCAGCGCC-CGCGAgcccugCCGGc -3' miRNA: 3'- aCGGCuuaGUCGCGGaGCGCUa-----GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 12234 | 0.73 | 0.551244 |
Target: 5'- cGCCGg--CGGCGCCguccgcggCGCcGAUCCGGa -3' miRNA: 3'- aCGGCuuaGUCGCGGa-------GCG-CUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 189901 | 0.72 | 0.610917 |
Target: 5'- cGCCG--UCAGCGCCgccgCGCGA-CCGc -3' miRNA: 3'- aCGGCuuAGUCGCGGa---GCGCUaGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 70546 | 0.72 | 0.600894 |
Target: 5'- aGCCG-AUCGuGCGCCUCGagcCGcUCCAGa -3' miRNA: 3'- aCGGCuUAGU-CGCGGAGC---GCuAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 104790 | 0.72 | 0.620955 |
Target: 5'- cGCCGAcaggCGGUGCUgcuUCGCGAUggCCAGg -3' miRNA: 3'- aCGGCUua--GUCGCGG---AGCGCUA--GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 44773 | 0.72 | 0.631001 |
Target: 5'- -cCCGAcgCAGCGCCUCcGUGAUCg-- -3' miRNA: 3'- acGGCUuaGUCGCGGAG-CGCUAGguc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 137375 | 0.72 | 0.620955 |
Target: 5'- aGCCGGGcgAGCGCCgaCGCgGGUCCGGu -3' miRNA: 3'- aCGGCUUagUCGCGGa-GCG-CUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 10330 | 0.71 | 0.691025 |
Target: 5'- gGCCGucGUCGGCGCC--GCGA-CCGGg -3' miRNA: 3'- aCGGCu-UAGUCGCGGagCGCUaGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 121034 | 0.71 | 0.700912 |
Target: 5'- gGCCGGAgagCGGCGCgUCGgGcgCCGc -3' miRNA: 3'- aCGGCUUa--GUCGCGgAGCgCuaGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 123824 | 0.71 | 0.700912 |
Target: 5'- aGCaGGAgCGGCGCC-CGuCGAUCCGGa -3' miRNA: 3'- aCGgCUUaGUCGCGGaGC-GCUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 90381 | 0.71 | 0.681091 |
Target: 5'- gGCCGggUCu-CGCCgucCGCGAUCgGGc -3' miRNA: 3'- aCGGCuuAGucGCGGa--GCGCUAGgUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 61878 | 0.71 | 0.700912 |
Target: 5'- cGCCGucGUCGGCGCCgCGCGG-CgAGc -3' miRNA: 3'- aCGGCu-UAGUCGCGGaGCGCUaGgUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 186861 | 0.71 | 0.651089 |
Target: 5'- cUGCCGug-CAGCaGCagcgggcucggCUCGCGGUCCGGc -3' miRNA: 3'- -ACGGCuuaGUCG-CG-----------GAGCGCUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 24014 | 0.71 | 0.660113 |
Target: 5'- cGCCGucaccgCGGCGCCUCggcgacgGCGGUCCc- -3' miRNA: 3'- aCGGCuua---GUCGCGGAG-------CGCUAGGuc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 115204 | 0.71 | 0.700912 |
Target: 5'- aGCCGGcgUAGCGCCUcCGCcuucugucgGAUCUGGc -3' miRNA: 3'- aCGGCUuaGUCGCGGA-GCG---------CUAGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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