Results 21 - 40 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10981 | 5' | -56.7 | NC_002794.1 | + | 116995 | 0.7 | 0.710743 |
Target: 5'- cGCCGuccgCGGCGUCUCGCccaGGUaCCAGc -3' miRNA: 3'- aCGGCuua-GUCGCGGAGCG---CUA-GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 141441 | 0.7 | 0.749336 |
Target: 5'- cGCCGGG--GGCGCCgggagcggCGCGGcgUCCGGa -3' miRNA: 3'- aCGGCUUagUCGCGGa-------GCGCU--AGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 78445 | 0.7 | 0.720509 |
Target: 5'- gGCgGAcgCGGaCGCgCUCGCGGUCuCGGu -3' miRNA: 3'- aCGgCUuaGUC-GCG-GAGCGCUAG-GUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 88753 | 0.7 | 0.720509 |
Target: 5'- cGCCGAGgaaugUGGUGCCUgGCGucgCCGGu -3' miRNA: 3'- aCGGCUUa----GUCGCGGAgCGCua-GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 75289 | 0.7 | 0.730203 |
Target: 5'- gGCCGGc-CGGCGCCUCGCcagCCGa -3' miRNA: 3'- aCGGCUuaGUCGCGGAGCGcuaGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 144946 | 0.7 | 0.745539 |
Target: 5'- gUGCUGGAccaccugugucuccUCGGCGCCUCGaCGGUgucgcgaccggcgCCGGg -3' miRNA: 3'- -ACGGCUU--------------AGUCGCGGAGC-GCUA-------------GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 187458 | 0.7 | 0.710743 |
Target: 5'- cGCCGc-UCGGCGUCgcucggCGCGcgCCGGg -3' miRNA: 3'- aCGGCuuAGUCGCGGa-----GCGCuaGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 38506 | 0.7 | 0.758758 |
Target: 5'- cGCCG-GUCGccGcCGCCUcCGCGAUcCCAGg -3' miRNA: 3'- aCGGCuUAGU--C-GCGGA-GCGCUA-GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 192438 | 0.7 | 0.749336 |
Target: 5'- gGCCGGcgcGUCGcGCGCCUCGCaGUCg-- -3' miRNA: 3'- aCGGCU---UAGU-CGCGGAGCGcUAGguc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 68834 | 0.7 | 0.749336 |
Target: 5'- cGCCGc--CGGCG-CUCGCGGUCCc- -3' miRNA: 3'- aCGGCuuaGUCGCgGAGCGCUAGGuc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 80042 | 0.7 | 0.739815 |
Target: 5'- cGCCGA--CAGUGCCggCGCGAgCCGc -3' miRNA: 3'- aCGGCUuaGUCGCGGa-GCGCUaGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 141710 | 0.7 | 0.739815 |
Target: 5'- gGCCGAAcCGGCG-UUCGCcGAUCCGa -3' miRNA: 3'- aCGGCUUaGUCGCgGAGCG-CUAGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 194026 | 0.69 | 0.77727 |
Target: 5'- cGCCGc--CGGCGCCUCGCccgCCGc -3' miRNA: 3'- aCGGCuuaGUCGCGGAGCGcuaGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 49619 | 0.69 | 0.786342 |
Target: 5'- cGCCGg--CGGCGCCUCGCccgCCc- -3' miRNA: 3'- aCGGCuuaGUCGCGGAGCGcuaGGuc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 34790 | 0.69 | 0.78544 |
Target: 5'- aGCCGAGUCGGCcgaaccggcccggGCCgCGCGAcaCCAc -3' miRNA: 3'- aCGGCUUAGUCG-------------CGGaGCGCUa-GGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 126433 | 0.69 | 0.786342 |
Target: 5'- gGUCGAgguGUgGGCGCCUCGgcccugGGUCCGGc -3' miRNA: 3'- aCGGCU---UAgUCGCGGAGCg-----CUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 76537 | 0.69 | 0.794393 |
Target: 5'- gGCCG---CGGCGCCgacgcggUCGCGcgCCGGg -3' miRNA: 3'- aCGGCuuaGUCGCGG-------AGCGCuaGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 102038 | 0.69 | 0.77727 |
Target: 5'- cGCCGAGcCGGCGuuCCUCGCGcgCUu- -3' miRNA: 3'- aCGGCUUaGUCGC--GGAGCGCuaGGuc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 69843 | 0.69 | 0.786342 |
Target: 5'- cGCUGGcUCAcCGCCUCGCGAa-CAGg -3' miRNA: 3'- aCGGCUuAGUcGCGGAGCGCUagGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 137467 | 0.69 | 0.804077 |
Target: 5'- cGCCGuGUCGGCgGCCUCGUaGAgcagcgCCAc -3' miRNA: 3'- aCGGCuUAGUCG-CGGAGCG-CUa-----GGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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