miRNA display CGI


Results 81 - 100 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 118266 0.67 0.882579
Target:  5'- gGCCGGGgcggCGGCGCCggCGuCGGggaccgcgCCGGg -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa-GC-GCUa-------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 131184 0.67 0.868417
Target:  5'- aGCCGGAgacagcaCGGCGCCgggGCGGcgCCGGu -3'
miRNA:   3'- aCGGCUUa------GUCGCGGag-CGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 181786 0.67 0.868417
Target:  5'- cGCCGcGUCucguucGgGCCUUG-GAUCCAGa -3'
miRNA:   3'- aCGGCuUAGu-----CgCGGAGCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 184751 0.67 0.893293
Target:  5'- cGCCGGuccagcguuccacgGUCAGCGCCggcucgcUCGuCGAcaccgucaacUCCGGg -3'
miRNA:   3'- aCGGCU--------------UAGUCGCGG-------AGC-GCU----------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 43259 0.67 0.861026
Target:  5'- cGCCGggUgGuaGCaCUCGCaGAUCCGc -3'
miRNA:   3'- aCGGCuuAgUcgCG-GAGCG-CUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 97674 0.67 0.861026
Target:  5'- aUGCUGGAgcgguUCGGCGCCgucaaCGCGcccGUCCGc -3'
miRNA:   3'- -ACGGCUU-----AGUCGCGGa----GCGC---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 79823 0.67 0.861026
Target:  5'- cGCCGAGU-GGCGCCagGUGAcgCCGa -3'
miRNA:   3'- aCGGCUUAgUCGCGGagCGCUa-GGUc -5'
10981 5' -56.7 NC_002794.1 + 123850 0.67 0.861026
Target:  5'- aUGCCGGgcGUCAGCcacgugcucGCCgagCG-GGUCCAGc -3'
miRNA:   3'- -ACGGCU--UAGUCG---------CGGa--GCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 137652 0.67 0.861026
Target:  5'- cGCCGGGccucCGGCGCCgcuggUGCGGacgcacggUCCAGu -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa----GCGCU--------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 187583 0.67 0.861026
Target:  5'- cGUCGGcgCGGcCGCCgUCGCGAcgcCCGGc -3'
miRNA:   3'- aCGGCUuaGUC-GCGG-AGCGCUa--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 126604 0.67 0.868417
Target:  5'- cGCCGAGgcCGGCGCCgacgUCGCGG-CguGa -3'
miRNA:   3'- aCGGCUUa-GUCGCGG----AGCGCUaGguC- -5'
10981 5' -56.7 NC_002794.1 + 108155 0.66 0.919815
Target:  5'- cGCCGGG--AGCGCCggCGCGAagacgCCGc -3'
miRNA:   3'- aCGGCUUagUCGCGGa-GCGCUa----GGUc -5'
10981 5' -56.7 NC_002794.1 + 191522 0.66 0.914174
Target:  5'- cGCCGGgcGUCGgcccGCGCCUCccGCcgcagucgGGUCCGGg -3'
miRNA:   3'- aCGGCU--UAGU----CGCGGAG--CG--------CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 110064 0.66 0.914174
Target:  5'- cGUCGGAg-AGCGCggaUCGCGGUCguGa -3'
miRNA:   3'- aCGGCUUagUCGCGg--AGCGCUAGguC- -5'
10981 5' -56.7 NC_002794.1 + 194818 0.66 0.914174
Target:  5'- aGCCGcagCGacGCGCgCUCGCGGcCCGGc -3'
miRNA:   3'- aCGGCuuaGU--CGCG-GAGCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 14642 0.66 0.908303
Target:  5'- gGCaCGGAgacgcCGGCGCCgcggCGuCGGUCCGa -3'
miRNA:   3'- aCG-GCUUa----GUCGCGGa---GC-GCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 186264 0.66 0.907704
Target:  5'- cGaCCGGAUCAcCGCCUggcgcggcggcacCGCGG-CCAGg -3'
miRNA:   3'- aC-GGCUUAGUcGCGGA-------------GCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 188019 0.66 0.902206
Target:  5'- cGcCCGucUCGGCGcCCUCGCcGUCcCGGa -3'
miRNA:   3'- aC-GGCuuAGUCGC-GGAGCGcUAG-GUC- -5'
10981 5' -56.7 NC_002794.1 + 148104 0.66 0.907704
Target:  5'- cUGCCGcucaagaagcgacGGUCGGUGUCgggCGCGGggccgCCGGg -3'
miRNA:   3'- -ACGGC-------------UUAGUCGCGGa--GCGCUa----GGUC- -5'
10981 5' -56.7 NC_002794.1 + 117621 0.66 0.902206
Target:  5'- cGCCGAGcgacagGGCGCCgaccgCGCGGccCCGGa -3'
miRNA:   3'- aCGGCUUag----UCGCGGa----GCGCUa-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.