miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 47409 0.76 0.395678
Target:  5'- aGCCGccGUCGGCGCCgucgCGCGGagcgCCAGg -3'
miRNA:   3'- aCGGCu-UAGUCGCGGa---GCGCUa---GGUC- -5'
10981 5' -56.7 NC_002794.1 + 112078 0.75 0.456521
Target:  5'- aGCCGAGUCAGCaggucCCguugCGCG-UCCAGg -3'
miRNA:   3'- aCGGCUUAGUCGc----GGa---GCGCuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 141602 0.75 0.46562
Target:  5'- cGCCGGGcggcUCGGCGaccggCUCGCGGUCUAGc -3'
miRNA:   3'- aCGGCUU----AGUCGCg----GAGCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 188340 0.75 0.474813
Target:  5'- cGCCGg--CGGCGCCgUCGCGcccGUCCGGc -3'
miRNA:   3'- aCGGCuuaGUCGCGG-AGCGC---UAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 12234 0.73 0.551244
Target:  5'- cGCCGg--CGGCGCCguccgcggCGCcGAUCCGGa -3'
miRNA:   3'- aCGGCuuaGUCGCGGa-------GCG-CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 194144 0.73 0.561091
Target:  5'- gGCCGcagCAGCGCC-CGCGAgcccugCCGGc -3'
miRNA:   3'- aCGGCuuaGUCGCGGaGCGCUa-----GGUC- -5'
10981 5' -56.7 NC_002794.1 + 167737 0.73 0.580922
Target:  5'- gGCaCGAu---GCuGCCUCGCGGUCCGGu -3'
miRNA:   3'- aCG-GCUuaguCG-CGGAGCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 70546 0.72 0.600894
Target:  5'- aGCCG-AUCGuGCGCCUCGagcCGcUCCAGa -3'
miRNA:   3'- aCGGCuUAGU-CGCGGAGC---GCuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 189901 0.72 0.610917
Target:  5'- cGCCG--UCAGCGCCgccgCGCGA-CCGc -3'
miRNA:   3'- aCGGCuuAGUCGCGGa---GCGCUaGGUc -5'
10981 5' -56.7 NC_002794.1 + 104790 0.72 0.620955
Target:  5'- cGCCGAcaggCGGUGCUgcuUCGCGAUggCCAGg -3'
miRNA:   3'- aCGGCUua--GUCGCGG---AGCGCUA--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 137375 0.72 0.620955
Target:  5'- aGCCGGGcgAGCGCCgaCGCgGGUCCGGu -3'
miRNA:   3'- aCGGCUUagUCGCGGa-GCG-CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 44773 0.72 0.631001
Target:  5'- -cCCGAcgCAGCGCCUCcGUGAUCg-- -3'
miRNA:   3'- acGGCUuaGUCGCGGAG-CGCUAGguc -5'
10981 5' -56.7 NC_002794.1 + 186861 0.71 0.651089
Target:  5'- cUGCCGug-CAGCaGCagcgggcucggCUCGCGGUCCGGc -3'
miRNA:   3'- -ACGGCuuaGUCG-CG-----------GAGCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 24014 0.71 0.660113
Target:  5'- cGCCGucaccgCGGCGCCUCggcgacgGCGGUCCc- -3'
miRNA:   3'- aCGGCuua---GUCGCGGAG-------CGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 90381 0.71 0.681091
Target:  5'- gGCCGggUCu-CGCCgucCGCGAUCgGGc -3'
miRNA:   3'- aCGGCuuAGucGCGGa--GCGCUAGgUC- -5'
10981 5' -56.7 NC_002794.1 + 10330 0.71 0.691025
Target:  5'- gGCCGucGUCGGCGCC--GCGA-CCGGg -3'
miRNA:   3'- aCGGCu-UAGUCGCGGagCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 115204 0.71 0.700912
Target:  5'- aGCCGGcgUAGCGCCUcCGCcuucugucgGAUCUGGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGA-GCG---------CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 121034 0.71 0.700912
Target:  5'- gGCCGGAgagCGGCGCgUCGgGcgCCGc -3'
miRNA:   3'- aCGGCUUa--GUCGCGgAGCgCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 61878 0.71 0.700912
Target:  5'- cGCCGucGUCGGCGCCgCGCGG-CgAGc -3'
miRNA:   3'- aCGGCu-UAGUCGCGGaGCGCUaGgUC- -5'
10981 5' -56.7 NC_002794.1 + 123824 0.71 0.700912
Target:  5'- aGCaGGAgCGGCGCC-CGuCGAUCCGGa -3'
miRNA:   3'- aCGgCUUaGUCGCGGaGC-GCUAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.