miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 187458 0.7 0.710743
Target:  5'- cGCCGc-UCGGCGUCgcucggCGCGcgCCGGg -3'
miRNA:   3'- aCGGCuuAGUCGCGGa-----GCGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 116995 0.7 0.710743
Target:  5'- cGCCGuccgCGGCGUCUCGCccaGGUaCCAGc -3'
miRNA:   3'- aCGGCuua-GUCGCGGAGCG---CUA-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 78445 0.7 0.720509
Target:  5'- gGCgGAcgCGGaCGCgCUCGCGGUCuCGGu -3'
miRNA:   3'- aCGgCUuaGUC-GCG-GAGCGCUAG-GUC- -5'
10981 5' -56.7 NC_002794.1 + 88753 0.7 0.720509
Target:  5'- cGCCGAGgaaugUGGUGCCUgGCGucgCCGGu -3'
miRNA:   3'- aCGGCUUa----GUCGCGGAgCGCua-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 75289 0.7 0.730203
Target:  5'- gGCCGGc-CGGCGCCUCGCcagCCGa -3'
miRNA:   3'- aCGGCUuaGUCGCGGAGCGcuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 141710 0.7 0.739815
Target:  5'- gGCCGAAcCGGCG-UUCGCcGAUCCGa -3'
miRNA:   3'- aCGGCUUaGUCGCgGAGCG-CUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 80042 0.7 0.739815
Target:  5'- cGCCGA--CAGUGCCggCGCGAgCCGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGa-GCGCUaGGUc -5'
10981 5' -56.7 NC_002794.1 + 144946 0.7 0.745539
Target:  5'- gUGCUGGAccaccugugucuccUCGGCGCCUCGaCGGUgucgcgaccggcgCCGGg -3'
miRNA:   3'- -ACGGCUU--------------AGUCGCGGAGC-GCUA-------------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 141441 0.7 0.749336
Target:  5'- cGCCGGG--GGCGCCgggagcggCGCGGcgUCCGGa -3'
miRNA:   3'- aCGGCUUagUCGCGGa-------GCGCU--AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 192438 0.7 0.749336
Target:  5'- gGCCGGcgcGUCGcGCGCCUCGCaGUCg-- -3'
miRNA:   3'- aCGGCU---UAGU-CGCGGAGCGcUAGguc -5'
10981 5' -56.7 NC_002794.1 + 68834 0.7 0.749336
Target:  5'- cGCCGc--CGGCG-CUCGCGGUCCc- -3'
miRNA:   3'- aCGGCuuaGUCGCgGAGCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 38506 0.7 0.758758
Target:  5'- cGCCG-GUCGccGcCGCCUcCGCGAUcCCAGg -3'
miRNA:   3'- aCGGCuUAGU--C-GCGGA-GCGCUA-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 194026 0.69 0.77727
Target:  5'- cGCCGc--CGGCGCCUCGCccgCCGc -3'
miRNA:   3'- aCGGCuuaGUCGCGGAGCGcuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 102038 0.69 0.77727
Target:  5'- cGCCGAGcCGGCGuuCCUCGCGcgCUu- -3'
miRNA:   3'- aCGGCUUaGUCGC--GGAGCGCuaGGuc -5'
10981 5' -56.7 NC_002794.1 + 34790 0.69 0.78544
Target:  5'- aGCCGAGUCGGCcgaaccggcccggGCCgCGCGAcaCCAc -3'
miRNA:   3'- aCGGCUUAGUCG-------------CGGaGCGCUa-GGUc -5'
10981 5' -56.7 NC_002794.1 + 69843 0.69 0.786342
Target:  5'- cGCUGGcUCAcCGCCUCGCGAa-CAGg -3'
miRNA:   3'- aCGGCUuAGUcGCGGAGCGCUagGUC- -5'
10981 5' -56.7 NC_002794.1 + 49619 0.69 0.786342
Target:  5'- cGCCGg--CGGCGCCUCGCccgCCc- -3'
miRNA:   3'- aCGGCuuaGUCGCGGAGCGcuaGGuc -5'
10981 5' -56.7 NC_002794.1 + 76909 0.69 0.786342
Target:  5'- cGgCGAc-CAGCG-CUCGCGAUCCAc -3'
miRNA:   3'- aCgGCUuaGUCGCgGAGCGCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 126433 0.69 0.786342
Target:  5'- gGUCGAgguGUgGGCGCCUCGgcccugGGUCCGGc -3'
miRNA:   3'- aCGGCU---UAgUCGCGGAGCg-----CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 76537 0.69 0.794393
Target:  5'- gGCCG---CGGCGCCgacgcggUCGCGcgCCGGg -3'
miRNA:   3'- aCGGCuuaGUCGCGG-------AGCGCuaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.