miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 76537 0.69 0.794393
Target:  5'- gGCCG---CGGCGCCgacgcggUCGCGcgCCGGg -3'
miRNA:   3'- aCGGCuuaGUCGCGG-------AGCGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 44227 0.69 0.79528
Target:  5'- cGCCGAGggcUCGGUGCCggGCGGcucggugCCGGg -3'
miRNA:   3'- aCGGCUU---AGUCGCGGagCGCUa------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 190113 0.69 0.804077
Target:  5'- cGCCG--UCcGCGCCgaaGCGGUCCGc -3'
miRNA:   3'- aCGGCuuAGuCGCGGag-CGCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 137467 0.69 0.804077
Target:  5'- cGCCGuGUCGGCgGCCUCGUaGAgcagcgCCAc -3'
miRNA:   3'- aCGGCuUAGUCG-CGGAGCG-CUa-----GGUc -5'
10981 5' -56.7 NC_002794.1 + 193314 0.68 0.812723
Target:  5'- cGCCGcAcgCAGCGCC-CGauCGGuUCCAGg -3'
miRNA:   3'- aCGGC-UuaGUCGCGGaGC--GCU-AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 185172 0.68 0.821212
Target:  5'- cGCCGGcgCGGCGCggucggCGCGGUCg-- -3'
miRNA:   3'- aCGGCUuaGUCGCGga----GCGCUAGguc -5'
10981 5' -56.7 NC_002794.1 + 62697 0.68 0.821212
Target:  5'- aGCUGuGUCGGCgGCCgccgaCGCGAcCCAGc -3'
miRNA:   3'- aCGGCuUAGUCG-CGGa----GCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 53950 0.68 0.821212
Target:  5'- aGCCGccaCAGaGCCUCGCGcGUCCGc -3'
miRNA:   3'- aCGGCuuaGUCgCGGAGCGC-UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 41589 0.68 0.821212
Target:  5'- cGCaCGGA-CGGCGCCUCGcCGAcgUCgCGGu -3'
miRNA:   3'- aCG-GCUUaGUCGCGGAGC-GCU--AG-GUC- -5'
10981 5' -56.7 NC_002794.1 + 190726 0.68 0.821212
Target:  5'- aGCCGGAgacgCAGCGCC-CGCcg-CCGu -3'
miRNA:   3'- aCGGCUUa---GUCGCGGaGCGcuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 48586 0.68 0.829534
Target:  5'- aGCCGGAggagCGGCGCgUCGCcGUCg-- -3'
miRNA:   3'- aCGGCUUa---GUCGCGgAGCGcUAGguc -5'
10981 5' -56.7 NC_002794.1 + 136720 0.68 0.829534
Target:  5'- cGCCGGuccCGGCGuCCagGCGGUCgAGg -3'
miRNA:   3'- aCGGCUua-GUCGC-GGagCGCUAGgUC- -5'
10981 5' -56.7 NC_002794.1 + 154330 0.68 0.830357
Target:  5'- cGUCGGucGUCccgGGUGCCgcggccgagcucccgCGCGGUCCAGg -3'
miRNA:   3'- aCGGCU--UAG---UCGCGGa--------------GCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 114231 0.68 0.835258
Target:  5'- aGCCG-AUCAGCGCgUCgagguggugaaagaGCGucUCCGGg -3'
miRNA:   3'- aCGGCuUAGUCGCGgAG--------------CGCu-AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 65266 0.68 0.836877
Target:  5'- cGCCGAGcggCGGCGCCUCcucgccccccucgGCGucGUCCu- -3'
miRNA:   3'- aCGGCUUa--GUCGCGGAG-------------CGC--UAGGuc -5'
10981 5' -56.7 NC_002794.1 + 187335 0.68 0.837684
Target:  5'- aGCCGGAgCAGCaGCCcgucguUCGCGGUCa-- -3'
miRNA:   3'- aCGGCUUaGUCG-CGG------AGCGCUAGguc -5'
10981 5' -56.7 NC_002794.1 + 44171 0.68 0.837684
Target:  5'- gGCgCGAG-CGGCGgCUCGuCGAcUCCGGg -3'
miRNA:   3'- aCG-GCUUaGUCGCgGAGC-GCU-AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 124404 0.68 0.845654
Target:  5'- cGCCGGucGUCggGGCGCCguccgcCGCGGUCUc- -3'
miRNA:   3'- aCGGCU--UAG--UCGCGGa-----GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 151565 0.68 0.845654
Target:  5'- cUGCUGAcgUAGCGCCccccggcggCGCGcgCCGc -3'
miRNA:   3'- -ACGGCUuaGUCGCGGa--------GCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 107532 0.68 0.845654
Target:  5'- gGCCGGcgCGGCGCCggcggCGaCGA-CCGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGa----GC-GCUaGGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.