miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 124404 0.68 0.845654
Target:  5'- cGCCGGucGUCggGGCGCCguccgcCGCGGUCUc- -3'
miRNA:   3'- aCGGCU--UAG--UCGCGGa-----GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 107532 0.68 0.845654
Target:  5'- gGCCGGcgCGGCGCCggcggCGaCGA-CCGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGa----GC-GCUaGGUc -5'
10981 5' -56.7 NC_002794.1 + 187583 0.67 0.861026
Target:  5'- cGUCGGcgCGGcCGCCgUCGCGAcgcCCGGc -3'
miRNA:   3'- aCGGCUuaGUC-GCGG-AGCGCUa--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 43259 0.67 0.861026
Target:  5'- cGCCGggUgGuaGCaCUCGCaGAUCCGc -3'
miRNA:   3'- aCGGCuuAgUcgCG-GAGCG-CUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 97674 0.67 0.861026
Target:  5'- aUGCUGGAgcgguUCGGCGCCgucaaCGCGcccGUCCGc -3'
miRNA:   3'- -ACGGCUU-----AGUCGCGGa----GCGC---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 80624 0.67 0.861026
Target:  5'- cUGCCGGccgAGCaCCUCGCGA-CCGGc -3'
miRNA:   3'- -ACGGCUuagUCGcGGAGCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 137652 0.67 0.861026
Target:  5'- cGCCGGGccucCGGCGCCgcuggUGCGGacgcacggUCCAGu -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa----GCGCU--------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 123850 0.67 0.861026
Target:  5'- aUGCCGGgcGUCAGCcacgugcucGCCgagCG-GGUCCAGc -3'
miRNA:   3'- -ACGGCU--UAGUCG---------CGGa--GCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 79823 0.67 0.861026
Target:  5'- cGCCGAGU-GGCGCCagGUGAcgCCGa -3'
miRNA:   3'- aCGGCUUAgUCGCGGagCGCUa-GGUc -5'
10981 5' -56.7 NC_002794.1 + 126604 0.67 0.868417
Target:  5'- cGCCGAGgcCGGCGCCgacgUCGCGG-CguGa -3'
miRNA:   3'- aCGGCUUa-GUCGCGG----AGCGCUaGguC- -5'
10981 5' -56.7 NC_002794.1 + 67679 0.67 0.868417
Target:  5'- cGCCGAccGUC-GCGgacuCCUCGUGAUUCAc -3'
miRNA:   3'- aCGGCU--UAGuCGC----GGAGCGCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 45430 0.67 0.868417
Target:  5'- cGCCGcg--AGCGUCUCGCGGacCCGGu -3'
miRNA:   3'- aCGGCuuagUCGCGGAGCGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 181786 0.67 0.868417
Target:  5'- cGCCGcGUCucguucGgGCCUUG-GAUCCAGa -3'
miRNA:   3'- aCGGCuUAGu-----CgCGGAGCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 131184 0.67 0.868417
Target:  5'- aGCCGGAgacagcaCGGCGCCgggGCGGcgCCGGu -3'
miRNA:   3'- aCGGCUUa------GUCGCGGag-CGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 127515 0.67 0.875603
Target:  5'- aGCUGGggCuGUGCCgcCGCGAUCCu- -3'
miRNA:   3'- aCGGCUuaGuCGCGGa-GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 84287 0.67 0.875603
Target:  5'- cUGCCGAcggggagcggCGGCGCUUCcugGCGA-CCGGg -3'
miRNA:   3'- -ACGGCUua--------GUCGCGGAG---CGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 152963 0.67 0.881201
Target:  5'- cGCCGAcgccuugGUCggGGCGCUUCGcCGAcaggcgucguaucUCCAGc -3'
miRNA:   3'- aCGGCU-------UAG--UCGCGGAGC-GCU-------------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 187626 0.67 0.881891
Target:  5'- cGCUGGAgaggcgcaagagaUCGcguucguaCGCCUCGCGGUCCAc -3'
miRNA:   3'- aCGGCUU-------------AGUc-------GCGGAGCGCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 107298 0.67 0.882579
Target:  5'- cGUCGAcgCuccucgcgggGGCGCCguccgCGCGGUUCGGc -3'
miRNA:   3'- aCGGCUuaG----------UCGCGGa----GCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 118266 0.67 0.882579
Target:  5'- gGCCGGGgcggCGGCGCCggCGuCGGggaccgcgCCGGg -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa-GC-GCUa-------GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.