miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 121940 0.66 0.913597
Target:  5'- gGCCGAcgcgcugAUCgAGCGCCUggaGCGcUCCGu -3'
miRNA:   3'- aCGGCU-------UAG-UCGCGGAg--CGCuAGGUc -5'
10981 5' -56.7 NC_002794.1 + 126298 0.66 0.908303
Target:  5'- cGCCGc----GCGCCUgGCGGUgCAGc -3'
miRNA:   3'- aCGGCuuaguCGCGGAgCGCUAgGUC- -5'
10981 5' -56.7 NC_002794.1 + 47938 0.66 0.908303
Target:  5'- cGCa-GAUCGGCGCCgCGCGucCCGGc -3'
miRNA:   3'- aCGgcUUAGUCGCGGaGCGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 114742 0.66 0.908303
Target:  5'- cGUCGAGcCGGCGCCgcccgccggCGCcGGUCCu- -3'
miRNA:   3'- aCGGCUUaGUCGCGGa--------GCG-CUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 120298 0.66 0.908303
Target:  5'- cGCCGAGccCGGgGCCUUGCuguUCCGu -3'
miRNA:   3'- aCGGCUUa-GUCgCGGAGCGcu-AGGUc -5'
10981 5' -56.7 NC_002794.1 + 14642 0.66 0.908303
Target:  5'- gGCaCGGAgacgcCGGCGCCgcggCGuCGGUCCGa -3'
miRNA:   3'- aCG-GCUUa----GUCGCGGa---GC-GCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 148104 0.66 0.907704
Target:  5'- cUGCCGcucaagaagcgacGGUCGGUGUCgggCGCGGggccgCCGGg -3'
miRNA:   3'- -ACGGC-------------UUAGUCGCGGa--GCGCUa----GGUC- -5'
10981 5' -56.7 NC_002794.1 + 186264 0.66 0.907704
Target:  5'- cGaCCGGAUCAcCGCCUggcgcggcggcacCGCGG-CCAGg -3'
miRNA:   3'- aC-GGCUUAGUcGCGGA-------------GCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 111974 0.66 0.902206
Target:  5'- aGCCGAgcGUCAGguccaccggcaCGCCcugCGCGGUcaCCAGu -3'
miRNA:   3'- aCGGCU--UAGUC-----------GCGGa--GCGCUA--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 60644 0.66 0.902206
Target:  5'- cGCCGg--CGGCGCCggccacccggCGCGcgCCGc -3'
miRNA:   3'- aCGGCuuaGUCGCGGa---------GCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 67841 0.66 0.902206
Target:  5'- cGCCGucgccCGGCGCCgccgCGCGucacCCGGc -3'
miRNA:   3'- aCGGCuua--GUCGCGGa---GCGCua--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 117621 0.66 0.902206
Target:  5'- cGCCGAGcgacagGGCGCCgaccgCGCGGccCCGGa -3'
miRNA:   3'- aCGGCUUag----UCGCGGa----GCGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 188019 0.66 0.902206
Target:  5'- cGcCCGucUCGGCGcCCUCGCcGUCcCGGa -3'
miRNA:   3'- aC-GGCuuAGUCGC-GGAGCGcUAG-GUC- -5'
10981 5' -56.7 NC_002794.1 + 120858 0.66 0.902206
Target:  5'- gGCCGucGUcCAGCGCCUCgGCugguGUCCGa -3'
miRNA:   3'- aCGGCu-UA-GUCGCGGAG-CGc---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 31331 0.67 0.895884
Target:  5'- cGUCGGcUCGGCGCC-CGCcguGUCCGc -3'
miRNA:   3'- aCGGCUuAGUCGCGGaGCGc--UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 66810 0.67 0.895884
Target:  5'- cGcCCGGcaucGUCagGGCGCCcggCGCGAcUCCGGg -3'
miRNA:   3'- aC-GGCU----UAG--UCGCGGa--GCGCU-AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 38007 0.67 0.895884
Target:  5'- cGCCGuaggccugCAGCGCUUCGgGAaagcCCGGc -3'
miRNA:   3'- aCGGCuua-----GUCGCGGAGCgCUa---GGUC- -5'
10981 5' -56.7 NC_002794.1 + 191374 0.67 0.895884
Target:  5'- gGCCGGAcccUCcGCGCC-CGCGG-CCGc -3'
miRNA:   3'- aCGGCUU---AGuCGCGGaGCGCUaGGUc -5'
10981 5' -56.7 NC_002794.1 + 129256 0.67 0.89524
Target:  5'- -cUCGggUCgAGCGCCUCgucgugaGCGggCCGGu -3'
miRNA:   3'- acGGCuuAG-UCGCGGAG-------CGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 184751 0.67 0.893293
Target:  5'- cGCCGGuccagcguuccacgGUCAGCGCCggcucgcUCGuCGAcaccgucaacUCCGGg -3'
miRNA:   3'- aCGGCU--------------UAGUCGCGG-------AGC-GCU----------AGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.