miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 695 0.66 0.914174
Target:  5'- gGCCgGAGUCGGCuguuuuuggGCCUcucCGCGAccCCGGg -3'
miRNA:   3'- aCGG-CUUAGUCG---------CGGA---GCGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 10330 0.71 0.691025
Target:  5'- gGCCGucGUCGGCGCC--GCGA-CCGGg -3'
miRNA:   3'- aCGGCu-UAGUCGCGGagCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 12234 0.73 0.551244
Target:  5'- cGCCGg--CGGCGCCguccgcggCGCcGAUCCGGa -3'
miRNA:   3'- aCGGCuuaGUCGCGGa-------GCG-CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 14642 0.66 0.908303
Target:  5'- gGCaCGGAgacgcCGGCGCCgcggCGuCGGUCCGa -3'
miRNA:   3'- aCG-GCUUa----GUCGCGGa---GC-GCUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 16436 0.66 0.919815
Target:  5'- cGCCGAGUCcGCGCUuguUCcCGAcUCCGa -3'
miRNA:   3'- aCGGCUUAGuCGCGG---AGcGCU-AGGUc -5'
10981 5' -56.7 NC_002794.1 + 19414 0.66 0.925226
Target:  5'- -cCCGGAUCGggcGCGCCcuccucCGCGA-CCAGg -3'
miRNA:   3'- acGGCUUAGU---CGCGGa-----GCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 24014 0.71 0.660113
Target:  5'- cGCCGucaccgCGGCGCCUCggcgacgGCGGUCCc- -3'
miRNA:   3'- aCGGCuua---GUCGCGGAG-------CGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 31331 0.67 0.895884
Target:  5'- cGUCGGcUCGGCGCC-CGCcguGUCCGc -3'
miRNA:   3'- aCGGCUuAGUCGCGGaGCGc--UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 34790 0.69 0.78544
Target:  5'- aGCCGAGUCGGCcgaaccggcccggGCCgCGCGAcaCCAc -3'
miRNA:   3'- aCGGCUUAGUCG-------------CGGaGCGCUa-GGUc -5'
10981 5' -56.7 NC_002794.1 + 38007 0.67 0.895884
Target:  5'- cGCCGuaggccugCAGCGCUUCGgGAaagcCCGGc -3'
miRNA:   3'- aCGGCuua-----GUCGCGGAGCgCUa---GGUC- -5'
10981 5' -56.7 NC_002794.1 + 38506 0.7 0.758758
Target:  5'- cGCCG-GUCGccGcCGCCUcCGCGAUcCCAGg -3'
miRNA:   3'- aCGGCuUAGU--C-GCGGA-GCGCUA-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 41589 0.68 0.821212
Target:  5'- cGCaCGGA-CGGCGCCUCGcCGAcgUCgCGGu -3'
miRNA:   3'- aCG-GCUUaGUCGCGGAGC-GCU--AG-GUC- -5'
10981 5' -56.7 NC_002794.1 + 43259 0.67 0.861026
Target:  5'- cGCCGggUgGuaGCaCUCGCaGAUCCGc -3'
miRNA:   3'- aCGGCuuAgUcgCG-GAGCG-CUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 44171 0.68 0.837684
Target:  5'- gGCgCGAG-CGGCGgCUCGuCGAcUCCGGg -3'
miRNA:   3'- aCG-GCUUaGUCGCgGAGC-GCU-AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 44227 0.69 0.79528
Target:  5'- cGCCGAGggcUCGGUGCCggGCGGcucggugCCGGg -3'
miRNA:   3'- aCGGCUU---AGUCGCGGagCGCUa------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 44773 0.72 0.631001
Target:  5'- -cCCGAcgCAGCGCCUCcGUGAUCg-- -3'
miRNA:   3'- acGGCUuaGUCGCGGAG-CGCUAGguc -5'
10981 5' -56.7 NC_002794.1 + 45430 0.67 0.868417
Target:  5'- cGCCGcg--AGCGUCUCGCGGacCCGGu -3'
miRNA:   3'- aCGGCuuagUCGCGGAGCGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 46140 0.67 0.889341
Target:  5'- cGuCCGAGUCGGCGUCgaUCGCccUCUGGa -3'
miRNA:   3'- aC-GGCUUAGUCGCGG--AGCGcuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 47409 0.76 0.395678
Target:  5'- aGCCGccGUCGGCGCCgucgCGCGGagcgCCAGg -3'
miRNA:   3'- aCGGCu-UAGUCGCGGa---GCGCUa---GGUC- -5'
10981 5' -56.7 NC_002794.1 + 47938 0.66 0.908303
Target:  5'- cGCa-GAUCGGCGCCgCGCGucCCGGc -3'
miRNA:   3'- aCGgcUUAGUCGCGGaGCGCuaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.