miRNA display CGI


Results 41 - 60 of 125 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 79823 0.67 0.861026
Target:  5'- cGCCGAGU-GGCGCCagGUGAcgCCGa -3'
miRNA:   3'- aCGGCUUAgUCGCGGagCGCUa-GGUc -5'
10981 5' -56.7 NC_002794.1 + 80042 0.7 0.739815
Target:  5'- cGCCGA--CAGUGCCggCGCGAgCCGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGa-GCGCUaGGUc -5'
10981 5' -56.7 NC_002794.1 + 80624 0.67 0.861026
Target:  5'- cUGCCGGccgAGCaCCUCGCGA-CCGGc -3'
miRNA:   3'- -ACGGCUuagUCGcGGAGCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 84287 0.67 0.875603
Target:  5'- cUGCCGAcggggagcggCGGCGCUUCcugGCGA-CCGGg -3'
miRNA:   3'- -ACGGCUua--------GUCGCGGAG---CGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 88753 0.7 0.720509
Target:  5'- cGCCGAGgaaugUGGUGCCUgGCGucgCCGGu -3'
miRNA:   3'- aCGGCUUa----GUCGCGGAgCGCua-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 89567 0.69 0.794393
Target:  5'- gUGCCGAgcgucccggugucAUCGGCcgucgaGCCgCGCGAUcCCGGg -3'
miRNA:   3'- -ACGGCU-------------UAGUCG------CGGaGCGCUA-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 90381 0.71 0.681091
Target:  5'- gGCCGggUCu-CGCCgucCGCGAUCgGGc -3'
miRNA:   3'- aCGGCuuAGucGCGGa--GCGCUAGgUC- -5'
10981 5' -56.7 NC_002794.1 + 96965 0.67 0.889341
Target:  5'- gGCCGAcacCAccGUGCCUCGCGAgcgcgUCaCGGg -3'
miRNA:   3'- aCGGCUua-GU--CGCGGAGCGCU-----AG-GUC- -5'
10981 5' -56.7 NC_002794.1 + 97674 0.67 0.861026
Target:  5'- aUGCUGGAgcgguUCGGCGCCgucaaCGCGcccGUCCGc -3'
miRNA:   3'- -ACGGCUU-----AGUCGCGGa----GCGC---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 102038 0.69 0.77727
Target:  5'- cGCCGAGcCGGCGuuCCUCGCGcgCUu- -3'
miRNA:   3'- aCGGCUUaGUCGC--GGAGCGCuaGGuc -5'
10981 5' -56.7 NC_002794.1 + 104790 0.72 0.620955
Target:  5'- cGCCGAcaggCGGUGCUgcuUCGCGAUggCCAGg -3'
miRNA:   3'- aCGGCUua--GUCGCGG---AGCGCUA--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 107298 0.67 0.882579
Target:  5'- cGUCGAcgCuccucgcgggGGCGCCguccgCGCGGUUCGGc -3'
miRNA:   3'- aCGGCUuaG----------UCGCGGa----GCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 107532 0.68 0.845654
Target:  5'- gGCCGGcgCGGCGCCggcggCGaCGA-CCGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGa----GC-GCUaGGUc -5'
10981 5' -56.7 NC_002794.1 + 108155 0.66 0.919815
Target:  5'- cGCCGGG--AGCGCCggCGCGAagacgCCGc -3'
miRNA:   3'- aCGGCUUagUCGCGGa-GCGCUa----GGUc -5'
10981 5' -56.7 NC_002794.1 + 110064 0.66 0.914174
Target:  5'- cGUCGGAg-AGCGCggaUCGCGGUCguGa -3'
miRNA:   3'- aCGGCUUagUCGCGg--AGCGCUAGguC- -5'
10981 5' -56.7 NC_002794.1 + 111118 0.66 0.919815
Target:  5'- gGCCGucgaCGGCGCCg-GCGG-CCGGu -3'
miRNA:   3'- aCGGCuua-GUCGCGGagCGCUaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 111974 0.66 0.902206
Target:  5'- aGCCGAgcGUCAGguccaccggcaCGCCcugCGCGGUcaCCAGu -3'
miRNA:   3'- aCGGCU--UAGUC-----------GCGGa--GCGCUA--GGUC- -5'
10981 5' -56.7 NC_002794.1 + 112078 0.75 0.456521
Target:  5'- aGCCGAGUCAGCaggucCCguugCGCG-UCCAGg -3'
miRNA:   3'- aCGGCUUAGUCGc----GGa---GCGCuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 113562 0.66 0.925226
Target:  5'- cGCCGGaccGUCuGCGUCUCgGCG-UCCu- -3'
miRNA:   3'- aCGGCU---UAGuCGCGGAG-CGCuAGGuc -5'
10981 5' -56.7 NC_002794.1 + 114231 0.68 0.835258
Target:  5'- aGCCG-AUCAGCGCgUCgagguggugaaagaGCGucUCCGGg -3'
miRNA:   3'- aCGGCuUAGUCGCGgAG--------------CGCu-AGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.