miRNA display CGI


Results 61 - 80 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 114742 0.66 0.908303
Target:  5'- cGUCGAGcCGGCGCCgcccgccggCGCcGGUCCu- -3'
miRNA:   3'- aCGGCUUaGUCGCGGa--------GCG-CUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 115204 0.71 0.700912
Target:  5'- aGCCGGcgUAGCGCCUcCGCcuucugucgGAUCUGGc -3'
miRNA:   3'- aCGGCUuaGUCGCGGA-GCG---------CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 116508 0.66 0.914174
Target:  5'- aUGCCGAGgcaGGCGUa--GCcGUCCAGg -3'
miRNA:   3'- -ACGGCUUag-UCGCGgagCGcUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 116802 0.66 0.925226
Target:  5'- aGCCGGcUCgGGCGCCguagCGCGggUCGc -3'
miRNA:   3'- aCGGCUuAG-UCGCGGa---GCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 116995 0.7 0.710743
Target:  5'- cGCCGuccgCGGCGUCUCGCccaGGUaCCAGc -3'
miRNA:   3'- aCGGCuua-GUCGCGGAGCG---CUA-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 117621 0.66 0.902206
Target:  5'- cGCCGAGcgacagGGCGCCgaccgCGCGGccCCGGa -3'
miRNA:   3'- aCGGCUUag----UCGCGGa----GCGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 118266 0.67 0.882579
Target:  5'- gGCCGGGgcggCGGCGCCggCGuCGGggaccgcgCCGGg -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa-GC-GCUa-------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 120298 0.66 0.908303
Target:  5'- cGCCGAGccCGGgGCCUUGCuguUCCGu -3'
miRNA:   3'- aCGGCUUa-GUCgCGGAGCGcu-AGGUc -5'
10981 5' -56.7 NC_002794.1 + 120858 0.66 0.902206
Target:  5'- gGCCGucGUcCAGCGCCUCgGCugguGUCCGa -3'
miRNA:   3'- aCGGCu-UA-GUCGCGGAG-CGc---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 121034 0.71 0.700912
Target:  5'- gGCCGGAgagCGGCGCgUCGgGcgCCGc -3'
miRNA:   3'- aCGGCUUa--GUCGCGgAGCgCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 121940 0.66 0.913597
Target:  5'- gGCCGAcgcgcugAUCgAGCGCCUggaGCGcUCCGu -3'
miRNA:   3'- aCGGCU-------UAG-UCGCGGAg--CGCuAGGUc -5'
10981 5' -56.7 NC_002794.1 + 123824 0.71 0.700912
Target:  5'- aGCaGGAgCGGCGCC-CGuCGAUCCGGa -3'
miRNA:   3'- aCGgCUUaGUCGCGGaGC-GCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 123850 0.67 0.861026
Target:  5'- aUGCCGGgcGUCAGCcacgugcucGCCgagCG-GGUCCAGc -3'
miRNA:   3'- -ACGGCU--UAGUCG---------CGGa--GCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 124404 0.68 0.845654
Target:  5'- cGCCGGucGUCggGGCGCCguccgcCGCGGUCUc- -3'
miRNA:   3'- aCGGCU--UAG--UCGCGGa-----GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 126298 0.66 0.908303
Target:  5'- cGCCGc----GCGCCUgGCGGUgCAGc -3'
miRNA:   3'- aCGGCuuaguCGCGGAgCGCUAgGUC- -5'
10981 5' -56.7 NC_002794.1 + 126433 0.69 0.786342
Target:  5'- gGUCGAgguGUgGGCGCCUCGgcccugGGUCCGGc -3'
miRNA:   3'- aCGGCU---UAgUCGCGGAGCg-----CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 126604 0.67 0.868417
Target:  5'- cGCCGAGgcCGGCGCCgacgUCGCGG-CguGa -3'
miRNA:   3'- aCGGCUUa-GUCGCGG----AGCGCUaGguC- -5'
10981 5' -56.7 NC_002794.1 + 127515 0.67 0.875603
Target:  5'- aGCUGGggCuGUGCCgcCGCGAUCCu- -3'
miRNA:   3'- aCGGCUuaGuCGCGGa-GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 129256 0.67 0.89524
Target:  5'- -cUCGggUCgAGCGCCUCgucgugaGCGggCCGGu -3'
miRNA:   3'- acGGCuuAG-UCGCGGAG-------CGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 131184 0.67 0.868417
Target:  5'- aGCCGGAgacagcaCGGCGCCgggGCGGcgCCGGu -3'
miRNA:   3'- aCGGCUUa------GUCGCGGag-CGCUa-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.