Results 81 - 100 of 125 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10981 | 5' | -56.7 | NC_002794.1 | + | 131735 | 0.67 | 0.889341 |
Target: 5'- gGgCGAgAUCGcgcuCGCCUCGCGAccgUCCGGa -3' miRNA: 3'- aCgGCU-UAGUc---GCGGAGCGCU---AGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 136720 | 0.68 | 0.829534 |
Target: 5'- cGCCGGuccCGGCGuCCagGCGGUCgAGg -3' miRNA: 3'- aCGGCUua-GUCGC-GGagCGCUAGgUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 137375 | 0.72 | 0.620955 |
Target: 5'- aGCCGGGcgAGCGCCgaCGCgGGUCCGGu -3' miRNA: 3'- aCGGCUUagUCGCGGa-GCG-CUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 137467 | 0.69 | 0.804077 |
Target: 5'- cGCCGuGUCGGCgGCCUCGUaGAgcagcgCCAc -3' miRNA: 3'- aCGGCuUAGUCG-CGGAGCG-CUa-----GGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 137652 | 0.67 | 0.861026 |
Target: 5'- cGCCGGGccucCGGCGCCgcuggUGCGGacgcacggUCCAGu -3' miRNA: 3'- aCGGCUUa---GUCGCGGa----GCGCU--------AGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 139451 | 0.68 | 0.845654 |
Target: 5'- cGCCG-AUCGGCagGUCgUCGUGcgCCAGg -3' miRNA: 3'- aCGGCuUAGUCG--CGG-AGCGCuaGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 141441 | 0.7 | 0.749336 |
Target: 5'- cGCCGGG--GGCGCCgggagcggCGCGGcgUCCGGa -3' miRNA: 3'- aCGGCUUagUCGCGGa-------GCGCU--AGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 141602 | 0.75 | 0.46562 |
Target: 5'- cGCCGGGcggcUCGGCGaccggCUCGCGGUCUAGc -3' miRNA: 3'- aCGGCUU----AGUCGCg----GAGCGCUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 141710 | 0.7 | 0.739815 |
Target: 5'- gGCCGAAcCGGCG-UUCGCcGAUCCGa -3' miRNA: 3'- aCGGCUUaGUCGCgGAGCG-CUAGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 142412 | 0.66 | 0.919815 |
Target: 5'- cGUCGg--CGGCGCCgggCGCGAUUaGGa -3' miRNA: 3'- aCGGCuuaGUCGCGGa--GCGCUAGgUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 144946 | 0.7 | 0.745539 |
Target: 5'- gUGCUGGAccaccugugucuccUCGGCGCCUCGaCGGUgucgcgaccggcgCCGGg -3' miRNA: 3'- -ACGGCUU--------------AGUCGCGGAGC-GCUA-------------GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 145526 | 0.67 | 0.889341 |
Target: 5'- gGCCGGccCgAGCGCCUCGgGcgCCc- -3' miRNA: 3'- aCGGCUuaG-UCGCGGAGCgCuaGGuc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 148104 | 0.66 | 0.907704 |
Target: 5'- cUGCCGcucaagaagcgacGGUCGGUGUCgggCGCGGggccgCCGGg -3' miRNA: 3'- -ACGGC-------------UUAGUCGCGGa--GCGCUa----GGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 151565 | 0.68 | 0.845654 |
Target: 5'- cUGCUGAcgUAGCGCCccccggcggCGCGcgCCGc -3' miRNA: 3'- -ACGGCUuaGUCGCGGa--------GCGCuaGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 151741 | 0.66 | 0.914174 |
Target: 5'- gGCCGc--CGGuCGCCUCGCGcgcucGUCCu- -3' miRNA: 3'- aCGGCuuaGUC-GCGGAGCGC-----UAGGuc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 152137 | 0.65 | 0.928877 |
Target: 5'- cUGCCGAGccgguucaacccgcUcCAGCGCCU-GCGggCCGc -3' miRNA: 3'- -ACGGCUU--------------A-GUCGCGGAgCGCuaGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 152963 | 0.67 | 0.881201 |
Target: 5'- cGCCGAcgccuugGUCggGGCGCUUCGcCGAcaggcgucguaucUCCAGc -3' miRNA: 3'- aCGGCU-------UAG--UCGCGGAGC-GCU-------------AGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 154330 | 0.68 | 0.830357 |
Target: 5'- cGUCGGucGUCccgGGUGCCgcggccgagcucccgCGCGGUCCAGg -3' miRNA: 3'- aCGGCU--UAG---UCGCGGa--------------GCGCUAGGUC- -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 154408 | 0.66 | 0.919815 |
Target: 5'- gUGCCGGuggcCAGCG-CUCGC-AUCCGa -3' miRNA: 3'- -ACGGCUua--GUCGCgGAGCGcUAGGUc -5' |
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10981 | 5' | -56.7 | NC_002794.1 | + | 157499 | 0.67 | 0.889341 |
Target: 5'- gUGCCG-AUCAGCuuaccggcggacGCgCUgGgGAUCCAGu -3' miRNA: 3'- -ACGGCuUAGUCG------------CG-GAgCgCUAGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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