miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 184751 0.67 0.893293
Target:  5'- cGCCGGuccagcguuccacgGUCAGCGCCggcucgcUCGuCGAcaccgucaacUCCGGg -3'
miRNA:   3'- aCGGCU--------------UAGUCGCGG-------AGC-GCU----------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 181786 0.67 0.868417
Target:  5'- cGCCGcGUCucguucGgGCCUUG-GAUCCAGa -3'
miRNA:   3'- aCGGCuUAGu-----CgCGGAGCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 177412 0.68 0.845654
Target:  5'- aGuCCGGAUCcGgGUuucuagaaCUCGCGAUCCGGc -3'
miRNA:   3'- aC-GGCUUAGuCgCG--------GAGCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 167737 0.73 0.580922
Target:  5'- gGCaCGAu---GCuGCCUCGCGGUCCGGu -3'
miRNA:   3'- aCG-GCUuaguCG-CGGAGCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 158877 0.66 0.914174
Target:  5'- cGuuGGAaCAGCGUUUCGCG-UUCGGu -3'
miRNA:   3'- aCggCUUaGUCGCGGAGCGCuAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 157499 0.67 0.889341
Target:  5'- gUGCCG-AUCAGCuuaccggcggacGCgCUgGgGAUCCAGu -3'
miRNA:   3'- -ACGGCuUAGUCG------------CG-GAgCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 154408 0.66 0.919815
Target:  5'- gUGCCGGuggcCAGCG-CUCGC-AUCCGa -3'
miRNA:   3'- -ACGGCUua--GUCGCgGAGCGcUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 154330 0.68 0.830357
Target:  5'- cGUCGGucGUCccgGGUGCCgcggccgagcucccgCGCGGUCCAGg -3'
miRNA:   3'- aCGGCU--UAG---UCGCGGa--------------GCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 152963 0.67 0.881201
Target:  5'- cGCCGAcgccuugGUCggGGCGCUUCGcCGAcaggcgucguaucUCCAGc -3'
miRNA:   3'- aCGGCU-------UAG--UCGCGGAGC-GCU-------------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 152137 0.65 0.928877
Target:  5'- cUGCCGAGccgguucaacccgcUcCAGCGCCU-GCGggCCGc -3'
miRNA:   3'- -ACGGCUU--------------A-GUCGCGGAgCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 151741 0.66 0.914174
Target:  5'- gGCCGc--CGGuCGCCUCGCGcgcucGUCCu- -3'
miRNA:   3'- aCGGCuuaGUC-GCGGAGCGC-----UAGGuc -5'
10981 5' -56.7 NC_002794.1 + 151565 0.68 0.845654
Target:  5'- cUGCUGAcgUAGCGCCccccggcggCGCGcgCCGc -3'
miRNA:   3'- -ACGGCUuaGUCGCGGa--------GCGCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 148104 0.66 0.907704
Target:  5'- cUGCCGcucaagaagcgacGGUCGGUGUCgggCGCGGggccgCCGGg -3'
miRNA:   3'- -ACGGC-------------UUAGUCGCGGa--GCGCUa----GGUC- -5'
10981 5' -56.7 NC_002794.1 + 145526 0.67 0.889341
Target:  5'- gGCCGGccCgAGCGCCUCGgGcgCCc- -3'
miRNA:   3'- aCGGCUuaG-UCGCGGAGCgCuaGGuc -5'
10981 5' -56.7 NC_002794.1 + 144946 0.7 0.745539
Target:  5'- gUGCUGGAccaccugugucuccUCGGCGCCUCGaCGGUgucgcgaccggcgCCGGg -3'
miRNA:   3'- -ACGGCUU--------------AGUCGCGGAGC-GCUA-------------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 142412 0.66 0.919815
Target:  5'- cGUCGg--CGGCGCCgggCGCGAUUaGGa -3'
miRNA:   3'- aCGGCuuaGUCGCGGa--GCGCUAGgUC- -5'
10981 5' -56.7 NC_002794.1 + 141710 0.7 0.739815
Target:  5'- gGCCGAAcCGGCG-UUCGCcGAUCCGa -3'
miRNA:   3'- aCGGCUUaGUCGCgGAGCG-CUAGGUc -5'
10981 5' -56.7 NC_002794.1 + 141602 0.75 0.46562
Target:  5'- cGCCGGGcggcUCGGCGaccggCUCGCGGUCUAGc -3'
miRNA:   3'- aCGGCUU----AGUCGCg----GAGCGCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 141441 0.7 0.749336
Target:  5'- cGCCGGG--GGCGCCgggagcggCGCGGcgUCCGGa -3'
miRNA:   3'- aCGGCUUagUCGCGGa-------GCGCU--AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 139451 0.68 0.845654
Target:  5'- cGCCG-AUCGGCagGUCgUCGUGcgCCAGg -3'
miRNA:   3'- aCGGCuUAGUCG--CGG-AGCGCuaGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.