miRNA display CGI


Results 41 - 60 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10981 5' -56.7 NC_002794.1 + 137652 0.67 0.861026
Target:  5'- cGCCGGGccucCGGCGCCgcuggUGCGGacgcacggUCCAGu -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa----GCGCU--------AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 137467 0.69 0.804077
Target:  5'- cGCCGuGUCGGCgGCCUCGUaGAgcagcgCCAc -3'
miRNA:   3'- aCGGCuUAGUCG-CGGAGCG-CUa-----GGUc -5'
10981 5' -56.7 NC_002794.1 + 137375 0.72 0.620955
Target:  5'- aGCCGGGcgAGCGCCgaCGCgGGUCCGGu -3'
miRNA:   3'- aCGGCUUagUCGCGGa-GCG-CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 136720 0.68 0.829534
Target:  5'- cGCCGGuccCGGCGuCCagGCGGUCgAGg -3'
miRNA:   3'- aCGGCUua-GUCGC-GGagCGCUAGgUC- -5'
10981 5' -56.7 NC_002794.1 + 131735 0.67 0.889341
Target:  5'- gGgCGAgAUCGcgcuCGCCUCGCGAccgUCCGGa -3'
miRNA:   3'- aCgGCU-UAGUc---GCGGAGCGCU---AGGUC- -5'
10981 5' -56.7 NC_002794.1 + 131184 0.67 0.868417
Target:  5'- aGCCGGAgacagcaCGGCGCCgggGCGGcgCCGGu -3'
miRNA:   3'- aCGGCUUa------GUCGCGGag-CGCUa-GGUC- -5'
10981 5' -56.7 NC_002794.1 + 129256 0.67 0.89524
Target:  5'- -cUCGggUCgAGCGCCUCgucgugaGCGggCCGGu -3'
miRNA:   3'- acGGCuuAG-UCGCGGAG-------CGCuaGGUC- -5'
10981 5' -56.7 NC_002794.1 + 127515 0.67 0.875603
Target:  5'- aGCUGGggCuGUGCCgcCGCGAUCCu- -3'
miRNA:   3'- aCGGCUuaGuCGCGGa-GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 126604 0.67 0.868417
Target:  5'- cGCCGAGgcCGGCGCCgacgUCGCGG-CguGa -3'
miRNA:   3'- aCGGCUUa-GUCGCGG----AGCGCUaGguC- -5'
10981 5' -56.7 NC_002794.1 + 126433 0.69 0.786342
Target:  5'- gGUCGAgguGUgGGCGCCUCGgcccugGGUCCGGc -3'
miRNA:   3'- aCGGCU---UAgUCGCGGAGCg-----CUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 126298 0.66 0.908303
Target:  5'- cGCCGc----GCGCCUgGCGGUgCAGc -3'
miRNA:   3'- aCGGCuuaguCGCGGAgCGCUAgGUC- -5'
10981 5' -56.7 NC_002794.1 + 124404 0.68 0.845654
Target:  5'- cGCCGGucGUCggGGCGCCguccgcCGCGGUCUc- -3'
miRNA:   3'- aCGGCU--UAG--UCGCGGa-----GCGCUAGGuc -5'
10981 5' -56.7 NC_002794.1 + 123850 0.67 0.861026
Target:  5'- aUGCCGGgcGUCAGCcacgugcucGCCgagCG-GGUCCAGc -3'
miRNA:   3'- -ACGGCU--UAGUCG---------CGGa--GCgCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 123824 0.71 0.700912
Target:  5'- aGCaGGAgCGGCGCC-CGuCGAUCCGGa -3'
miRNA:   3'- aCGgCUUaGUCGCGGaGC-GCUAGGUC- -5'
10981 5' -56.7 NC_002794.1 + 121940 0.66 0.913597
Target:  5'- gGCCGAcgcgcugAUCgAGCGCCUggaGCGcUCCGu -3'
miRNA:   3'- aCGGCU-------UAG-UCGCGGAg--CGCuAGGUc -5'
10981 5' -56.7 NC_002794.1 + 121034 0.71 0.700912
Target:  5'- gGCCGGAgagCGGCGCgUCGgGcgCCGc -3'
miRNA:   3'- aCGGCUUa--GUCGCGgAGCgCuaGGUc -5'
10981 5' -56.7 NC_002794.1 + 120858 0.66 0.902206
Target:  5'- gGCCGucGUcCAGCGCCUCgGCugguGUCCGa -3'
miRNA:   3'- aCGGCu-UA-GUCGCGGAG-CGc---UAGGUc -5'
10981 5' -56.7 NC_002794.1 + 120298 0.66 0.908303
Target:  5'- cGCCGAGccCGGgGCCUUGCuguUCCGu -3'
miRNA:   3'- aCGGCUUa-GUCgCGGAGCGcu-AGGUc -5'
10981 5' -56.7 NC_002794.1 + 118266 0.67 0.882579
Target:  5'- gGCCGGGgcggCGGCGCCggCGuCGGggaccgcgCCGGg -3'
miRNA:   3'- aCGGCUUa---GUCGCGGa-GC-GCUa-------GGUC- -5'
10981 5' -56.7 NC_002794.1 + 117621 0.66 0.902206
Target:  5'- cGCCGAGcgacagGGCGCCgaccgCGCGGccCCGGa -3'
miRNA:   3'- aCGGCUUag----UCGCGGa----GCGCUa-GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.